RNA id: XM_022684517.1


Basic Information

Item Value
RNA id XM_022684517.1
length 6220
RNA type mRNA
GC content 0.50
exon number 32
gene id vwde
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11732929 ~ 11767714 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTATATAAAGCGCATGTTGAATAAAGAAAGTCTGAGTAATTGTATAATGAGTTGGTTAGATGTTGAGTGCTCTCCTGTAGCTGAGTGTGGGAGTTTATCTCCAGCGCGGGGAGCTGAGACCTGCTgactggagctgagctgagctgagacTGACTGCGTCTACCTACTTTCCTTCTGCAGACCTCCTTCAGTGGATTCACTAAACGTTGAATCGTAGTTTTGGACGTTTCTGAGACGTTTCACTCGTTATTATCCTGAAGTCTGAGGGGGTAAGAGCTCCTGCAGTGAGTTCCTCCAGGTTCTGCTCGTCAGAACCGCAGTGAATCCTCTAAAATGTGCCCGGATTTCTGGATCTGTCTGGCCGCGGTTCTCTACACAGCTCACCTCTCTCAGGCAGCAGAGCCTCCAGAGTGCAGTCCAGGAGGTCACACTGTTCTACAGAACCCCTACCGGAGCACCAGCTTCACCTCTCAGCAGCTGCCCCAGTCTGCCCTGCAGGAGAAGCTCATCTGTGACCACTCACTGGCCCCCGGGTGGTACCAGTTTCAGATCTTTGATAAACCCGCCCGTATGCCCACCAAATGTGTGGAGGTAAATCACTGTGGAACCCAAGCTCCAGTTTGGCTCTCTCTGGCTGAGGGGGAGACTCTCCCACAGCCCTTGGAAGTCAAGCAGCTGACGGCGTGTGCTACCTGGCAGTTCTTCAATGGGCCCAATAAGGACTGCTGTCTGTTCCGGCTGCCTGTATCTGTACGTAACTGTGGGGAGTTCTATGTGTACCTGCTCCAGCCCACACAGGGCTGTATGGCTTACTGCGCTGAGGAAATGCCAGACTCCACACAGTCAGGCTGTGAAGCTGCACTCAGGAATGAAGATGGAACTTGCAATGATAAGCAGCCCCCTTCTCCTTCAGTGCCTGAAATTATGGCAGAACTGTCAGGAAGCAGTGTGTTCCTAAAGTGTATGTTTGATGGCAGCAGTGGGAACAGTTCTCTGGGCTATGTAGTGACATGGTGGCGTCTGTCCCTGGATGGTAACAAAGAGGAGCTCAGACAGGAGACCACCATACAGACCTTCGCCTTTATTGAACTGGATGGCATCAACCTGCGACTGGGAGACAGGATCTGCTGCAGTTGTTCCAGCTTCTTTCTGGACGCTCCAGATATACAGGGTTTCTCGGTGGAGAGTGAGGAGTTCTTTGCAGGGATTCGACTGGAACCTGAGCTTGCCTCGATCTCAGAGGATGGGAAGGAGTATGAGCTGGTGATAGAGAGCACTGTGCCTCTGCCCTGCATTTCAAAGTCATGCAGGCTACCATTACAACTCAGCACCAGCAGCCAAGGTACAGGCGAGGTGGCTCTGGGTGCTGATCTGGTCCTGTCCTCCTGTGAAGTGGAATTGTCTCATGCTGTGTGCCGTAAGGGGGTGTGCAGCCAGGCCTTGCTTCACTACAGTCCAGTCACTGACATCATCAAAGACGGAGACAGAATCACTAACATATCTATGAAACCTATAGTCAGCACCAATTTTCTCTGGAATGGATATACATCTCAAAGTgttcagatAACAGTTAAAGACGTCCCACCTGCTTACTGTTACGTTTTCACAGATCCTCACATCATCACCTTTGATGGCAGGCGTTATGATAACTACCAGATAGGCACCTTTCTGTTGTACAAGAGCCGAGCTCGGCCATTCGAGGTGAACGTGCGGCAGTGGGAGTGTGCTAGCTTGACTGCCCACCCCACGTCCTGTGTGTGTGGCTTTGCAGCCAGAGACGGGAGTAACGTCATCACCTTTGATATGTGTAATGGGATGGCTGGAGAGACTAAGCCACATCTGCTGGTGAAGAACGGAAACCTGGCGAAGAGTGGAATCCGCATCACTAAGTCCTATCAGGGCCGCAAACTGACCCTGTCATTCCCTTCAGGTACGTTTGTACGAGCAGATGTGTCAGACTGGGGCATGAGCCTGACTCTGAGGGCCCCTGGTTCTGATAGGGGCCACACTGAGGGCCTCTGTGGAACCTTTGATGGCCAACCCCTCAATGACTTCCACAAGGAGGGAGATAAGACTGTGAAAGACAGTGCTTCCTTTATCAACTCCTGGAGGCTAGCACCAGGAACCAGCTTTTTTAACAAAGCCCCACCCCTTGAACGCACCCCAAGCAACCAGCACTACTGCAACTGTGATCCAGAACGCCGCCAATCAAGCTTTAGAGCCCGCCCTCCAGTtaactcctcctcctgctcttaTTTGGCCCGTCTCAACTCCCCTTTCATCATCCCTGCTCTGGATTTGACTGCAGAGTACATCAGCTCTCAGGGGCCTTTGAGAAAACCGCCAGTGCCTCCACAAAGACCCAGGCAAAATGCCCAGACACGAAGAGTGGGTACAGGCACCCGGAGTAACACGAGGAGACGAGGGAGACGCCAGAACCACAGACAagcttcttcctcctcctcagccTATCAGAGTCAGAGGCAGTCCAACCTGGGTGATGCTGCTAGCTATTACTTCCCTGAGGATCATACTGGATCTAATGAGCCTGAGTTGCCTCCACCAACCTGGCCTACTGAGTCTGGTCTGACTGAGTCCGATGCCCGGCAGCTCTGTGAGAGGGCCCTGCGGAACTCCACTGTTGGTCTGGGTTGTGGTGCCCTCCTCGTCGGGGTGATGGAGCAGGCACTGGAGATGTGTGTGTTGGACCAGCAGCTAAAGGATGACCAGGCCTGGCTGGGGGGCACCGTGCCCCTGCTGGAGAACGAGTGTGAGAGGagagtggtggaggagatgGGAAGGAGGGAGGAGATCAGCAGCATACTGAACTTCCTCAGGTGCCCCAGTCTTTGCAGTGGTAATGGGCAGTGCACCGAGCGGGGCTGCATGTGCTTTCCAGGATTTGGCTCCTATGACTGCAGCCAAGTGTCTGatgAGACCCCGGAGATCAGAGAGCTGGAGGGTGGAGGACTCTGTGATGTTAGACACGCCTCCTGCTCCACTGTACGAGTTCTGGGGAAAGGCTTCAGAAATGCCTTTGAGCTGAAGTGTGAAGTTATGAAGGAGAAGATAGTAGACGGTGAGTGGTCACTGGGGGATTCTCTGATGGTTCCTGCATCGTTCCTCAGCTCCTCTGCATTAGAGTGTCAGCTCCCTGTAGAAGACTTGCAGTCTGCTGGTGTCCCACACCCACCAGTCACCCGCTGGCAAATCAAGgTTTCCAATGACGGCTACAGCTTCAGCAATGCCAAGATTCTTACGCTGTTTGATGGAACATGTCAAGTGTGCACACTTAACAGTGGGGTTCAGTGCTCTTTgaagAACAGAAGCTGTAACATTGATGGTCAGTGTTATGGAGAAGGAGAACGCAGCCCCAGCAGCCCCTGCCTCACCTGCCGACCTGATCTCGCCAAGTATACCTGGTCCATCAGTGAGAAAAACGAGCCTCCAGTGTTCCACTCAGAGCAGACCCACCTGCAAACGTTTTTCCAGGAAAACTTTGTGTACCAGTTCTTAGCCACTGATCCTGAGGGTTCAGCGGTGATGTTCACGCTGGTGTCCGGGCCCAGGGATGCCGTGCTCTCTCCTGCTGGTTTGCTCATTTGGAAAGCCCTGTCGTCCTCCCCTGTGACCTTTGAACTGGCTGTGACGGATGACTGTAATGCAGAGACCAGGGCCAGAGTGGTGGTTTCAGTGCGCCAGTGTGAGTGCCACCATGGAGCCTCCTGTGTTACCAACATTAACTTCCCCCCTGGCTCTGGAGAGTACCTGTGTGTCTGTCCAGCTGGTCTAGAGGGAGTGAGATGTGAAATCAATATGAACGAATGTAAATCTAACCCCTGTCTGAGGGGTGAATGTGTGGATGGGCTGAATTCATTCACATGTGTCTGTCCAGCAGGTTTCACAGGTGTGATCTGTGAGGAGGACATTGATGAGTGTCAGTTAGCTCCGTGTTTCCCTGGAGTGGCGTGTGAGAACACACAAGGGTCGTTTAAGTGTGGACACTGCCCCGAACACCTCAGTGGTGATGGAAGAATCTGCAGCCGTAAAGTAGCTGTCAATGTCAGTGAAGACCATCTGGGAGTTGACAGGGGAGTTAAACCTTCCAAACCAAACTTTGGACCAGCTCAGAACCCGTGTTCCAGTCGACCCTGTCATCCAGGAGTCCAGTGCTTTGAGAGTGTGTACACATCTGCTGGCTTCATCTGCGGCCCCTGTCCCCCAGGACTTCACGGCAACGGCCAAACCTGCACCTCCAGATCTGCCAACAGGCAATTACAGGGCGGTGTGGAAGTGGACAGGCCTGGTGTAACTTCGTCCACCTCTCGGAAAGCTGCTGATCCCTCTGTTCGAGCTGGAAAATCTCCCTCCAGCAAGGAGAGACCATCACCCACTGACAGAATTACTTCAGTAAGCAGTACTGACCAGATTATTGATGCTGCAAGGGCTTCAGGCACTGGTGTCAAGCTCCATGAGGAGGAAGTTGCTCTAGTGCTGTTTGTGGATGGGAGGACGTGTGCTGATTCCCCGTGTTACAGTGGCGTGGCTTGTGAGCCAACCTCTACTGGACACTTCAAGTGTGGCCCGTGTCCTAATGGTTACAGGGGGGATGGAATCACCTGCAAAGCGGTGTGCCGCTACCTGTGCGGTCAGAACATGGAGTGTACTCTGCCGAACACATGCACCTGCAAAGAAGGGTACACTGGCTACAACTGCCACATCGCTGTGTGTCGTCCTGACTGCAAGAACAGAGGGAAGTGTGTGAAACCTAATGTGTGTGAGTGCCCAGCAGGCTACAGCGGACCAACCTGTGAAGAAGCTAATTGTGATCCACCATGCCAAAACGGAGGCAGCTGTTTGTCCAGAAACCTCTGCACCTGCCCCTATGGATACGTGGGGCCACAATGTGAAATTATGGTGTGTAACAGACACTGTGAGAATGGTGGGGAGTGTGTATCTCCtgatgtgtgtaagtgtaagccTGGCTGGTACGGACCCACATGTAACTCAGCTGATTGTAAGCCTGTGTGTCTGAATGGAGGCACCTGCATTAAGCCCAACATCTGTGCCTGTCCCACTGGGTTTTATGGATCACAGTGTCAGATAGCTGTATGTAGTCCACCCTGCAAAAACCGTGGACAGTGCATGAGGAACAACGTGTGCTCCTGTCCTGAAGGCTACACTGGAAAGAAATGTCAATATAGTGTGTGTGATCCAATGTGCCTGAACAAAGGAAAGTGTGTGGGCCCAAACACCTGTTCCTGTGCCTCTGGTTGGAGAGGGGATGTCTGCAGCATTCCTGTGTGCttacagaaatgtaaaaatggaGGGGAGTGTGTGGGTCCCAATACCTGCCACTGTCCTGCTGGATGGGATGGCTTGCAGTGCCAGAATCCCATCTGCAGAAACAAGTGCCTCAATGGAGGGAGGTGTGTGCTGCCCGACTACTGCCACTGTCGCCCGGGGTACAGCGGGCCCACCTGTGCCACTAGAATCAGATGATGAAAGAAGTGCAAGAGACTAAACAGGCATGAGGAACTGGCTTTAAAcatcctgtctgtctgtttctgaaaataaatatatatggacAAGATAGTGATGTTTATGGGTGTACGTGAACTTGCATATCTTCACTGCAATAAATGTAttcccccccccttttttttttttttttacttttctacaattgttttaatgcaattatgTGCAGAACTTTTGCTGGAAATGAGTTGATTTCTAAATACCaacatttacagttttacaaattttataaaaacataattttaccaGATTTCTAAGAAGCTATATGTCTTTTATCATATACTGCAGCAGCAGTAACAATGTCTAATACAGAACCAAAGAAAGCACAGTGTATATACGGCTAAAAATGACTATATACATGTACATGTATACATTTCTTGAACTAAATTAGAATATATTTTACCgtcatatatatgttttattttttgaattaGTTATacaatgcgttttttttttttttttacaaaatatgtaaattatgtGTAATTGGAACAATACTTTGAATCTACAATGTAcaattttgtttaattgttttattggtttaaaaatatacaggTAACACTGGGTATATGTATTATCTCCAATGTAAACTTCTATATCAAGTACCTTAACTTcttactgaattaaaataaagtacaaaaacaTCAAGAGACCTGTAATAATAGTTGTTTTACATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3894 lncRNA upstream 21583 11698557 ~ 11711348 (+) True LOC111195845
TU3902 lncRNA upstream 26499 11704873 ~ 11706432 (+) True G2985
XR_002651868.1 lncRNA upstream 32804 11699096 ~ 11700127 (+) False LOC111195845
TU3892 lncRNA upstream 102100 11629773 ~ 11630831 (+) False LOC111192815
XR_002650143.1 lncRNA upstream 102415 11629286 ~ 11630516 (+) True LOC111192815
TU4042 lncRNA downstream 156736 11924450 ~ 11927250 (+) False G3096
XR_002652018.1 lncRNA downstream 190361 11958075 ~ 11958465 (+) True LOC111196183
TU4082 lncRNA downstream 338677 12106391 ~ 12109036 (+) True G3129
TU4166 lncRNA downstream 479263 12246977 ~ 12252612 (+) True G3179
TU4203 lncRNA downstream 809366 12577080 ~ 12658307 (+) True G3205
XM_022684232.1 mRNA upstream 122159 11505371 ~ 11610772 (+) False etv1
XM_022684275.1 mRNA upstream 122159 11505371 ~ 11610772 (+) False etv1
XM_022684182.1 mRNA upstream 122159 11505372 ~ 11610772 (+) True etv1
XM_007232338.3 mRNA upstream 122159 11586980 ~ 11610772 (+) False etv1
XM_022684128.1 mRNA upstream 237835 11431963 ~ 11495096 (+) True agmo
XM_007232342.3 mRNA downstream 23317 11791031 ~ 11805598 (+) True LOC103026019
XM_007232343.3 mRNA downstream 23317 11791031 ~ 11805598 (+) False LOC103026019
XM_015601046.2 mRNA downstream 23317 11791031 ~ 11805598 (+) False LOC103026019
XM_007232344.3 mRNA downstream 23317 11791031 ~ 11805598 (+) False LOC103026019
XM_007232345.3 mRNA downstream 23317 11791031 ~ 11805598 (+) False LOC103026019
TU3793 other upstream 444085 11288131 ~ 11288846 (+) True G2910
TU3788 other upstream 453772 11273998 ~ 11279159 (+) False LOC103029949
XR_001518524.2 other upstream 1990466 9634094 ~ 9742465 (+) False LOC103039705
TU3313 other upstream 2062806 9631865 ~ 9670125 (+) True G2509
TU3170 other upstream 2775539 8944479 ~ 8957392 (+) True lyrm9
TU4041 other downstream 156736 11924450 ~ 11927250 (+) True G3096
TU4335 other downstream 1214911 12982625 ~ 12984269 (+) True G3313
TU4998 other downstream 3193459 14961173 ~ 14963583 (+) True G3736
TU5080 other downstream 3270841 15038555 ~ 15038914 (+) True G3790
trnae-uuc_1 other downstream 3278599 15046313 ~ 15046384 (+) True trnae-uuc_1

Expression Profile