RNA id: XM_015602301.2


Basic Information

Item Value
RNA id XM_015602301.2
length 1950
RNA type mRNA
GC content 0.38
exon number 6
gene id LOC103045400
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14875553 ~ 14880632 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTGATCAGTGGCTTTAATAATTAATGGAGCATTTTCTGAGCTCTCAGTAGCCAGTGTTGTTGCTGTTTGCTTTTCTGAAGGATAAAGACACAGCATAGTCTTGAACATAAAAGATAATATTGTCCTGCTTTTTGGAACAACGCCATTGATTGGCTTGAACATGAATCCTGAATATGACTACCtgttcaagctgctgctgattggaGATTCCGGAGTGGGAAAGTCATGTTTACTACTACGTTTTGCGGATGACACTTATACTGAAAGCTACATCAGCACCATTGGGGTTGACTTCAAAATCAGGACTATTGAAATGGATGGGAAAATAGTAAAACTGCAGATTTGGGATACAGCCGGTCAGGAGAGATTTCGAACTATAACATCCAGCTACTACAGAGGTGCCCATGGGATCATCATTGTGTATGATGTTACTGACCAGGAATCCTTCAATAATCTGAAGCAGTGGTTGGAGGAGATTGATCGGTATGCATGTGAAAATGTCTCCAAGTTGCTGGTGGGGAACAAGAGTGATTTAACATCAAAAAAGGTGGTGGACTTCACCACTGCCAAAGAATTTGCTGAGCCACTTAAAATTCCATTTCTTGAATCAAGTGCAAAGAATGCAAGCAATGTGGAGAAGGCCTTTTTAACCATGGCCTCAGAAATTCAGAAGCGACTCGGGTCAGAGAACGTTCAGAACGAGACTGTAAAAGTGGGAGCCAAAATAAACAGTGCTCCCCTGTGGCCTGGAGGACAGAGTGGGACTGCGGAGGAGGTCAGCACCTGCTGTTAGTGCTTACAGGTTTAAATTCAGGGTATTCTAATTTTGAAAAGGAAActtttgtgaaaaaatatgatttttagtttatactGATGAACAGTGGCCTTACTAACTGATTGCCTGTTTTCTGTGTGACATATAACTGAGTTTAAGATTTGCCTTCTTACTGCGTTTCCCTTTCTGTTAGGTAAAACAAGTATAGGATTATTTGCCTTTTTTACAGTGGTGTTCATATTATAAGCCAAATGGCATGCAGGCAAGTGTTTGAGCTTATTGGATCACCCATTCTTGTCTGCACAGTTTAGTATACGTAGAACCACATTCACCAGATCTTGGTGAACTGGCAATAAATGTAGGCTGCTTTGTTTAGAAACGACAACACTGCTGGCCATGTTGCTCATTATCCATTTCTATATCATTATTAATctgatataaaatgtaattttagctGCAGCTGAAATtgactaaatattttataagtTGTTAAGTCTACAGTTCCTCCCCCTtaatttgtttactgtttattgttatCTATAGGACAGATCTTCTTCTATCACATAAATTCCACAGACTGGTAGATCTGACTGATAATGTAGTGCTGAGCATTTGCTGGGATTTGAACTTATGCTCTCCTTATATTTGATGAGCAGCAGATCAAAGGGCCGCTCtagaactgaaaaaaatgtatgtggTTTCTCAGCTCTCAAGTGGAGTGACTGTCTAACTGCCTGCCTGTCAAGAAATGGGAGATTATTAGCTTAAATGCAGCTCCTTGACCGAACTGAGTTGTTCAAATAAAAATTGGccatttttagcatttattcattatttgtgCAGCTCACAATGTATAGAATCAGTTTGTGGATTTTACTAAGCAAGAAAACAAGACCTGAACTAACCTGATTTCTTAACTAAGATAAAGATATTAGACATGTTTGGCATCAAATCTAATTCTACCAAAGGTAAAATTCTCATTTTCAAGTATCACTggaaaaatttgtttttttctatgtaCATTTCTAAATAACAGGTATTTGCTTTTGAAGGAAAACCCCATCATCTGGCATAGAATATTTAGATACACAAAGACAAATGAAAATGGCAATCACgtgttttaaaaattatgtaCTTTATACTTCTTCAAATAAACAATGTACACACATTGTAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4972 lncRNA upstream 29929 14841868 ~ 14845624 (+) False LOC107197063
TU4973 lncRNA upstream 29929 14841868 ~ 14845624 (+) False LOC107197063
TU4876 lncRNA upstream 281494 14592933 ~ 14594059 (+) True G3648
TU4748 lncRNA upstream 362764 14511140 ~ 14512789 (+) True G3575
TU4733 lncRNA upstream 370538 14444558 ~ 14505015 (+) False LOC103039352
TU5077 lncRNA downstream 154134 15034766 ~ 15035187 (+) True G3787
TU5078 lncRNA downstream 155310 15035942 ~ 15036582 (+) True G3788
TU5085 lncRNA downstream 188798 15069430 ~ 15069802 (+) True G3794
TU5093 lncRNA downstream 240102 15120734 ~ 15134707 (+) True G3800
TU5131 lncRNA downstream 374825 15255457 ~ 15255899 (+) True G3816
XM_007236845.3 mRNA upstream 76 14870734 ~ 14875477 (+) True LOC103045089
XM_007236844.3 mRNA upstream 6958 14859897 ~ 14868595 (+) True LOC103044784
XM_007236838.3 mRNA upstream 16144 14847183 ~ 14859409 (+) True LOC103043366
XM_022665774.1 mRNA upstream 16144 14847183 ~ 14859409 (+) False LOC103043366
XM_022665613.1 mRNA upstream 29927 14840293 ~ 14845626 (+) True LOC107197063
XM_007236848.3 mRNA downstream 6667 14887299 ~ 14903497 (+) True LOC103046009
XM_022666185.1 mRNA downstream 26151 14906783 ~ 14930747 (+) False LOC103046311
XM_022666151.1 mRNA downstream 26152 14906784 ~ 14930747 (+) False LOC103046311
XM_007236849.3 mRNA downstream 26153 14906785 ~ 14938834 (+) True LOC103046311
XM_007236851.3 mRNA downstream 60048 14940680 ~ 14955344 (+) True wsb1
TU4335 other upstream 1891284 12982625 ~ 12984269 (+) True G3313
TU4041 other upstream 2948303 11924450 ~ 11927250 (+) True G3096
TU3793 other upstream 3586707 11288131 ~ 11288846 (+) True G2910
TU3788 other upstream 3596394 11273998 ~ 11279159 (+) False LOC103029949
XR_001518524.2 other upstream 5133088 9634094 ~ 9742465 (+) False LOC103039705
TU4998 other downstream 80541 14961173 ~ 14963583 (+) True G3736
TU5080 other downstream 157923 15038555 ~ 15038914 (+) True G3790
trnae-uuc_1 other downstream 165681 15046313 ~ 15046384 (+) True trnae-uuc_1
XR_002649582.1 other downstream 192208 15072840 ~ 15162274 (+) False LOC103023550
TU5723 other downstream 1662310 16542942 ~ 16545854 (+) True G4221

Expression Profile