RNA id: XM_022669057.1


Basic Information

Item Value
RNA id XM_022669057.1
length 1995
RNA type mRNA
GC content 0.53
exon number 7
gene id lsamp
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 17454350 ~ 17873816 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gTGGTGAGGCAGCGCGCGGGCTGGAGCAGCGTCTCGTGTGCGCGGGTTTGTACCGGAGCTCCAGCGCGCGCTCCGCTCTCAGCGCCGTTAGTTTGTTGGTTTTTTATTGAACTCGGAgctcgagctgctgctgctgcgtgtCCGTGCACGCGCTGAGATCACCGCACCACTTTTCTCGGATCTACCGCTGGCTCGCGCGTTTGTGTGTttgcccgtgtgtgtgtgtgcgcgcgtggagtgagcgtgtgtgtgtgtatgtgtatgtgtgcgcgCGTGCGTGCGTGAGAGAGAGTGCGTGGAGATGTGGCGCACGAGCAGAGCGCGGCTGGCCCAGCTGCGCGCGTGCTTCTTCCGACTGCTGTGTCTTCTGCCCGCAGGAGTGTCGGTGCGGAGCGCGGACCTGCAGCGCGCGACCGACAACATCACCATCCGACAGGGGGACACCGCCGTCATCAGGTGCTACGTGGATGACAAAGTCTCCAAGGTGGCCTGGCTCAACCGCTCCAACATCATCTTTGCCGGTGAGGACAAGTGGTCTCTGGACCCTCGCGTGGACCTGGTGACCAAGGGCCAGCTGGAGTACAGCCTGCGCATCCAGAAGGTGGACGTGTTCGACGAAGGTCCCTACACCTGCTCTATCCAGACTAAGCAGCAGTCCAAGACCTCCCAGGTCTACCTCATCGTCCAAGtTCCCGCCAATATTTACAGAGTTTCAGAGGACATCAATGTGAATGAAGGCAGCAACGTGACGCTCAGCTGCCTCGCCAACGGCAGGCCGGACCCCTCCATCACCTGGAGGCTGCTCAGTCCGTCAGAAACTCTGGAGGTGGGCGAGTATTTGGAGATTTCTGGAATCATGCGTACTCAGGCCGGACGCTACGAATGCAAAGCCAGCAACGACGTAGCAGCTCCCGACGTCAAATACGTCAACGTCATCGTCAACTATCCACCTTTCATTAAGGGTGCTAAAAGCTCGGAGACGCAGGTGGGGCGGATGGGTGTTCTACAGTGTGATGCCACTGCTGTGCCCAAACCAGAGTTCGAGTGGTACCGAGACGACAAGAGgctGTCTAATATGCAGGGCGTCAGTATTCAGATCATCGGCACTCGTACTCTCTTGCTGGTGGCGAACGTTACAGAAGAAGATTATGGAAACTACACCTGCATGGCCACCAACCGACTGGGAACACACAACGCTAGCGTCTTTCTTTACAGACCTGGAACCGGACGGGACATCAACGGCTCGGCATGCGTCTCTAAGTCCGTGTGGCTCCTCGTCCTGCCCTTCCTCCTGCCTCTACTCAAGTGTTAATACTCAGCGCTGCACTCGttcaccaccaccacacctctctctctctctctttctgtctcttctgcattatttctctttctcttccccccccccactctctgtctgtctctttatccttctctctctctctctttctctctctttctctcccagaCTGTTCGCATCACCATCGCAGAACGAACCGTGCCTCCAGGCGCGCCAAACTAGGTACACTTACAATTGAAAGCAGAGGAACGGGACGGGCTGTTAGCGCGAGTCGGTGTCAAACAAGTacgaaacaaaagaaaagaaaaggaattcCCGTGAAGAAGTGCGGAGAAGACAGTGCTCtttatatatgatatgatatttgTTATCTTCACTCCTCAGATCCTTGTTTTCCACTGTTCTGgagtcttcttttcttttctttttcttttcttttcttttcttttcttttgttcctTCTTTCGTTTCGCTCGTCTTTTCTCACACCATCTCGAGAACATGCAGAGAGCGGAGATCTTGCACATTTAGCGAGAGTTCAAACTGACTCTTGGCCGCGTCACTCAACAATCATCCAGATATTCTGATAAACAGCTTCTGAGCGCTAATTTTTTGATACTGTAATCCTGAATTTTAATCCCGAAGTGTCTTCGGTACTTGCCAAACATGTAACTTAAGCAAAGCTAGttcgaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5947 lncRNA upstream 87099 17366847 ~ 17367251 (+) True G4406
TU5942 lncRNA upstream 106340 17347662 ~ 17348010 (+) True G4401
TU5877 lncRNA upstream 265104 17189032 ~ 17189246 (+) True G4346
TU5868 lncRNA upstream 296499 17157644 ~ 17157851 (+) True G4337
TU5865 lncRNA upstream 299254 17154760 ~ 17155096 (+) True G4334
TU5998 lncRNA downstream 8772 17882588 ~ 17921005 (+) False G4456
TU6000 lncRNA downstream 8772 17882588 ~ 17921005 (+) True G4456
XR_002649869.1 lncRNA downstream 16412 17890228 ~ 17943162 (+) True LOC111192366
TU6007 lncRNA downstream 55908 17929724 ~ 18009347 (+) True G4460
TU6015 lncRNA downstream 84696 17958512 ~ 17985189 (+) False G4467
XM_022671138.1 mRNA upstream 762591 16689234 ~ 16691759 (+) True LOC111192859
XM_007245963.3 mRNA upstream 810530 16633323 ~ 16643820 (+) True LOC103044410
XM_007245962.3 mRNA upstream 810530 16633323 ~ 16643820 (+) False LOC103044410
XM_015604947.2 mRNA upstream 840552 16561487 ~ 16613798 (+) False mark4
XM_022671146.1 mRNA downstream 136362 18010178 ~ 18012103 (+) True LOC103039709
XM_022669104.1 mRNA downstream 143943 18017759 ~ 18022389 (+) True LOC111192370
XM_007233939.3 mRNA downstream 250878 18124694 ~ 18131953 (+) True LOC103030597
XM_022669160.1 mRNA downstream 264208 18138024 ~ 18166677 (+) False sidt2
XM_022669153.1 mRNA downstream 264209 18138025 ~ 18166677 (+) True sidt2
TU5717 other upstream 831281 16619046 ~ 16623069 (+) False G4219
TU5719 other upstream 831610 16619046 ~ 16622740 (+) True G4219
TU5723 other upstream 908496 16542942 ~ 16545854 (+) True G4221
XR_002649582.1 other upstream 2292076 15072840 ~ 15162274 (+) False LOC103023550
trnae-uuc_1 other upstream 2407966 15046313 ~ 15046384 (+) True trnae-uuc_1
TU6119 other downstream 198148 18071964 ~ 18073663 (+) True G4550
trnaw-cca other downstream 527238 18401054 ~ 18401125 (+) True trnaw-cca
trnag-ucc other downstream 529889 18403705 ~ 18403776 (+) True trnag-ucc
TU6209 other downstream 885559 18759375 ~ 18759858 (+) True G4612
TU6210 other downstream 885559 18759375 ~ 18759858 (+) False G4612

Expression Profile