RNA id: XM_022669701.1


Basic Information

Item Value
RNA id XM_022669701.1
length 1827
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC103025167
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22032579 ~ 22037644 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCCCAGCTGTGATTGTCTGCAGAAGAGCAGTACTTGCCGGGTGTTTTCTCACCAGTGAGGCCTGTGTAGCCATCTGCTCTGCTCTACAATCAGTGAACTCCTCCCTGAaggagctggacctcagtagcaatgacctgcaggattcaggagtggagctaatctctgctggactgaagagttcacaatgTAAACTGCAGAAACTCAGGCTAACTGTGTGTAAACTTGAGAAACAATCTTGTGAAAATCTGAGGTCAGTTTTGAAAACAGTaaactcctccctgaaagagctggacctcagctacaatgacctgcaggattcaggagtggagctactctctgctggactgaagagttcacactgtaaactggagtCACTCAGACTAGTTATGTGTAATCTCGGTGAAAAATCTTGTGAATATCTGAGTTCAGTTCTACAATCAGTAAACTCCTctctgaaagagctggacctcagtaacaatgatCTGCAGGATTTAGGAGTAGAGCTGCTGTCTGCTGGActaaagagttcacactgtaaactggagataCTCAGaTTGTCTGGGTGTATGATTACAGAAGAAGGCTGTTCttctctggcttcagctctgaaatCAGAAATATCCTTTGTGAAAGAACTGGATCTAACGTATAATCACCCTGGAGACTCTGGATTTAAGCTGTTGTCTGGTCTATTGGAAGatccacactgtaaactggaaaAACTGCTtgtgGAACATGGAGGACAGAACAGGATAAAACCAggagtaaaaaaatatGCCTGTGAGTTCAATCTGGACCCAAATACGGTACACACACTCCTTTCTCTGTGTGACGGGAACAGAAAGGTGAAGTGGGAGGAAGAACATCAGCCATATCCGGATCATCCAGACAGATTTAATCGTTTGCAGCAGGTTCTGAGTGTGGAAAGTCTGActggacgctgttactgggTGACTGAATGGAGAAGAGGAAGGGGAGCTGATGTAGCCGTGTCCTACAGAGGGATCAAGAGGAAAGGAGGCAATAAGGATGGTCGGTTTGGATCCACTGATCAGTCCTGGATTCTGAAATACTCAGAAAACAGTTACACTGTCATTCACAATAAAGAAAATCTCTGTGAATTTCCCCTCCCACGTCGCTCTAACAAAGTAGGAGTGTATCTGGACTGGCCAGCTGGCATTCTGTCCTTCTACAGCATCTCATCTTTCAcaaacacactgacccacatacacacactccaaaCCACATTCACTGAGCCACTCTATGCAGGGTTTGGGGTTCGTTATGGCTCCTCTGCACGTGTCTGTGAGGTAGAATAGCCCCTGGGGTTAAATTTAGACATATTAAAATGGATTTAGTTTGTTTCGAAGAGATGAGGAGTGTGTGGAAGTTAGCTAATAGTAGTTCAAGTTGTTTGTGGGGATTGGATTAGATCTGCAGTAACTGCAGATGAAAATTAGGTAACATGAGGTAAAGGGACTTTAAAGACAGTGTGTCATTGTGCATTTTAACTGTTTAGTTTTAAGCTACTATACGTGTTTTCATTTTGGTGATGTTATGTTCAATAAAGGATTTACTGTACCGTGAAAAGTATTCATATTCGCTTGAAGTTTCTCACAATTTCccacaaaaaaattaatgatttttataaaaatctgaAGGACGTGGCGTGAATTTGTGTTCAATCTCCCTGACTCAATACTTTGTAGGAGCACCTTTTTGTACATGTAAAGGCTGAATTGTTTTGCCAATTCCTccttataaaacagctcaagctcagtcaggttggaaggagagcatctgtgaagcgcaattttcatgtcttg

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7114 lncRNA upstream 93373 21932689 ~ 21939206 (+) True G5333
TU7112 lncRNA upstream 107700 21923120 ~ 21924879 (+) True G5331
TU7110 lncRNA upstream 112082 21916582 ~ 21920497 (+) True G5329
TU6795 lncRNA upstream 362927 21662490 ~ 21669652 (+) True G5067
TU6797 lncRNA upstream 373833 21655037 ~ 21658746 (+) True G5069
TU7169 lncRNA downstream 63362 22101006 ~ 22154926 (+) True LOC103022859
TU7193 lncRNA downstream 89354 22126998 ~ 22129294 (+) False G5371
TU7198 lncRNA downstream 89354 22126998 ~ 22129294 (+) True G5371
TU7202 lncRNA downstream 89354 22126998 ~ 22128411 (+) False G5371
TU7212 lncRNA downstream 131468 22169112 ~ 22197485 (+) True G5379
XM_007247645.3 mRNA upstream 118811 21908273 ~ 21913768 (+) True phox2a
XM_007247646.3 mRNA upstream 141602 21824927 ~ 21890977 (+) True clpb
XM_015605447.2 mRNA upstream 141602 21824927 ~ 21890977 (+) False clpb
XM_022669568.1 mRNA upstream 771381 21248853 ~ 21261198 (+) True LOC103042160
XM_022669575.1 mRNA upstream 771381 21248853 ~ 21261198 (+) False LOC103042160
XM_015605424.2 mRNA downstream 7078 22044722 ~ 22050555 (+) True LOC103025996
XM_007247641.3 mRNA downstream 7078 22044722 ~ 22050555 (+) False LOC103025996
XM_007247632.3 mRNA downstream 18878 22056522 ~ 22101546 (+) False LOC103022859
XM_007247631.2 mRNA downstream 35866 22073510 ~ 22101546 (+) False LOC103022859
XM_007247630.3 mRNA downstream 46293 22083937 ~ 22101546 (+) False LOC103022859
TU6745 other upstream 1033379 20983707 ~ 20999200 (+) True G5026
TU6659 other upstream 1480970 20549217 ~ 20551609 (+) False LOC107197594
TU6404 other upstream 2866948 19160731 ~ 19165631 (+) True G4775
TU6210 other upstream 3272721 18759375 ~ 18759858 (+) False G4612
trnag-ucc_4 other downstream 551816 22589460 ~ 22589531 (+) True trnag-ucc_4
trnag-ucc_5 other downstream 552857 22590501 ~ 22590572 (+) True trnag-ucc_5
trnag-ucc_6 other downstream 553775 22591419 ~ 22591490 (+) True trnag-ucc_6
XR_002649972.1 other downstream 604966 22642610 ~ 22673984 (+) False LOC103041654
XR_002649973.1 other downstream 604966 22642610 ~ 22664836 (+) False LOC103041654

Expression Profile