RNA id: XM_022669898.1


Basic Information

Item Value
RNA id XM_022669898.1
length 1269
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC103042688
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22904775 ~ 22909631 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGCGCGCTCATGGCCGGCAGGAGGCACGTGATCAGGAGTAGGCACTCAGTGATTTTGTTAATGTTCTGCAGCTCGGAGCTCTTCTCCACTGTTTCTGAGCGTTCTGGAGGAGTTTGGTGAAGGAGTTTTGTGGAGGTGTTTTGTGGAGGTGTGTGAGGGAGTTCGTGTGATGGAGCGCTGGAAGGGCAGGGTAGCTCTGGTCTCTGGAGCCTCGGTGGGGATCGGAGCTGCTGTAGTGAAGGAGCTCGTTCAGCATGGTATGAAGGTGGTGGGCTGCGCCAGGAGCGTGGACAAGATAGAGAAACTGGCAGCAGAATGCGCTCGATCCGGATTCAGCGGAACTCTGATTCCATACAAGTGTGATCTGTCTGTGGAGGAGGAGATTATAAACATGTTctctgcaatcaaatcctcacaccaGGGCGTCGATGTGTTAATCAATAATGCTGGATTAGCTCTACCAGAACCCTTACTGACTGGAAGAACCAGCAGCTGGAGAACCATGATTGATgtGAACGTAATAGCGCTGTCGATCTGCACTCGTGAAGCATATCAGTccatgaaagagagaaatgtgGATGATGGACACATCATTAACATAAACAGCATGAGTGGACACCGGGTGGTGCAAAGTGCTGATGTACACTTCTACAGTTCCACCAAGTACGCTGTGACCGCTCTCACTGAGGGCCTCCGACAGGAACTGAGGGACACCAAGAGCCACATACGTGCTACATGTATTTCTCCTGGTCTAGTGGAAACAGAATTCGCTTATCGGCTCTACAGTGAAAACCCAGAGAAAGCTGCAGCTACTTACGGAAGTATAaagtgTCTTCAGGCTGGTGATGTTGCCAGTGCTGTGGTTTATGCTCTGAGTTCTCCTCCACACGTTCAGaTTGGAGATATACAGATGAGGGCTGTGGAACAGGTGTCTTAATGAACAGAGAGACTCTGTGTATTAAACAGTGTCTAAACTACCAGATGACTGAAAGACTGAAGATCTGAACCTGGAACTATTGAAGAACTCTAGCAGTGGTGAACTTtgagtgaaaaaataaaacaggacaCCTACTGTGAAACATTGGGCTGTTGATTTTTAAGGGGGTGTGGCTAAAACTGAAGATATAAAACTTTACACCAGACCTTCTGctgcctctccactcttcctccagactctgaagctcgatttccaaatgaaatgcaaaaggTTTTCATTAGCTGCAATCCATTATaatcaacagtaaaataaataaacactcgaaatagat

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7581 lncRNA upstream 80709 22822871 ~ 22824066 (+) True G5619
TU7548 lncRNA upstream 197006 22707113 ~ 22707769 (+) True G5595
TU7339 lncRNA upstream 380029 22521606 ~ 22524746 (+) False LOC103043812
TU7342 lncRNA upstream 407873 22481707 ~ 22496902 (+) True LOC103043812
TU7622 lncRNA downstream 40196 22949827 ~ 22951675 (+) True G5640
TU7629 lncRNA downstream 46429 22956060 ~ 22958499 (+) True G5642
XR_002649989.1 lncRNA downstream 58360 22967991 ~ 22974947 (+) True LOC111192542
TU7645 lncRNA downstream 116511 23026142 ~ 23026556 (+) True G5657
TU7748 lncRNA downstream 167526 23077157 ~ 23077356 (+) True G5736
XM_022669901.1 mRNA upstream 958 22896314 ~ 22903817 (+) True LOC103042381
XM_007248607.3 mRNA upstream 11676 22880837 ~ 22893099 (+) True LOC103022249
XM_022671161.1 mRNA upstream 37725 22862378 ~ 22867050 (+) True LOC103021718
XM_007248605.2 mRNA upstream 66348 22835801 ~ 22838427 (+) True LOC103047689
XM_022669867.1 mRNA upstream 74697 22812700 ~ 22830078 (+) True LOC103047173
XM_022669894.1 mRNA downstream 1320 22910951 ~ 22917840 (+) True LOC103043000
XM_022669887.1 mRNA downstream 1394 22911025 ~ 22925516 (+) False LOC103021948
XM_022669890.1 mRNA downstream 9345 22918976 ~ 22925516 (+) True LOC103021948
XM_007248610.3 mRNA downstream 31098 22940729 ~ 22946604 (+) True LOC103023064
XM_022669969.1 mRNA downstream 65889 22975520 ~ 22998282 (+) False nek8
XR_002649977.1 other upstream 146562 22708912 ~ 22758213 (+) False LOC103045948
XR_002649972.1 other upstream 230791 22642610 ~ 22673984 (+) False LOC103041654
XR_002649973.1 other upstream 239939 22642610 ~ 22664836 (+) False LOC103041654
trnag-ucc_6 other upstream 313285 22591419 ~ 22591490 (+) True trnag-ucc_6
trnag-ucc_5 other upstream 314203 22590501 ~ 22590572 (+) True trnag-ucc_5
TU7588 other downstream 1392 22911023 ~ 22923081 (+) False G5620
TU7589 other downstream 1392 22911023 ~ 22923081 (+) False G5620
TU7634 other downstream 54429 22964060 ~ 22964924 (+) True G5646
TU7839 other downstream 402881 23312512 ~ 23351306 (+) False G5797
TU7837 other downstream 434865 23344496 ~ 23351046 (+) True G5797

Expression Profile