RNA id: XM_022670223.1


Basic Information

Item Value
RNA id XM_022670223.1
length 4025
RNA type mRNA
GC content 0.53
exon number 29
gene id dgkd
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 24064679 ~ 24087802 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTCCCTCCGCTGGAGGGCGCTGTGGGCGGCCTGGCTCAGGATGGCGGCGGCTGGTTGCGAGGCGCCGCGGTGTATGGAGGATTCTTCGGACAGCGAGCCGGAGCACCGCGGGTCCACGCACAAGCTCATCCGGAAGGTGTCCACCTCGGGGCAGATCCGCAGTAAGacggTGCTGAAGGAAGGGCAGCTGATGAAGCAGACAAACTCGTTCCAGCGCTGGAAGCGACGGTACTTTAAGCTGCGCGGGAGAACACTGTACTATGCCCAGACTGCCAAGTCGATCATCTTTGATGAAGTGGATCTAACAGACGCCAGTGTAGCAGAGTCCAGTACAAAGAACGTCAACAACAGCTTTACtATTATCACTCCGTGTCGGCGGCTGATCCTCTGTGCTGAAAACAGGAAGGAGATGGAGGAGTGGATGGCGGCGCTGAAGAGCGTCCAGAACAGAGAACACTTTGAGtccaCACAGTACAGTATGGATCATTTCTCTGGGCTCCATAACTGGTACGCCTGTTCTCACGCCCGGCCCACCTACTGCAACGTCTGCAGAGAAGCTCTGAGCGGAGTCACCTCACACGGCCTTTCCTGCGAAGTGTGTAAGTTCAAAGCCCATAAGCGTTGTGCAGTCAGAGCCACTAATAACTGTAAGTGGACGACTTTGGCCTCCATCGGGAAGGACATCATCGAGGACGAGGAGGGGatCTTTATGCCCCATCAGTGGCTGGAGGGAAATCTGCCGGTCAGTGCtaagtgtacagtgtgtgataAGACGTGTGGCAGTGTGCTGAGACTGCAGGACTGGCGCTGTCTCTGGTGTAAAGccatggTGCATGCAGCGTGTAAGGATCAGCTGTCAACTAAGTGTCCTCTGGGTCAGTGTAAAGTCAGTGTGATCCCGCCCACTGCCCTCAACAGCATCGACTCTGACGgtTTCTGGAAGGCGACGTGTCCCCCGTCCTGCACTAGTCCTCTGCTGGTGTTTGTGAACAGTAAGAGTGGAGATAATCAGGGAGTGAAGTTTCTGCGCAGGTTTAAGCAGCTGCTGAATCCAGCTCAGGTGTTTGACCTGATGAATGGAGGACCTCACCTGGGtttGCGTCTTTTTCAGAAGTTTGACACATTCAGGATTTTGGTGTGTGGAGGAGACGGCAGTGTGGGCTGGGTTCTCTCAGAGATAGACACTCTAACACTGCACAAACAGTGTCAGTTGGGGGTGTTGCCATTAGGAACAGGAAATGACCTGGCACGGGTGCTGGGGTGGGGCGCGGCGTGTGATGACGACACACAGCTCCCCCAAATCCTGGAGAAACTGGAGAGAGCCAGCACCAAGATGCTGGACAGATGGAGCATCATGGTTTATGAGACCAAGTTTCCACGGCAGCACTCCAGCTCCACGGTAACCGAGGACTGCAGCGAAGACTCAGAGGTGCAGCACATTCTGACTTATGAGGACTCGGTTGCAGCTCATCTGTCTAAAATCCTCACCTCCGACCAGCACTCTGTCGTCATCTCCTCTGCCAAAGTTCTATGTGAGACAGTAAAGGACTTTGTAGCGAAAGTGGGTCGAGCGTAcgagaaaaacactgaaaacttaGAAGAGTCTGAGACGATGGCCAAAAAGtgTGGAGTGTTAAAGGAGAAGCTGGACTCGTTATTGAAGACGCTGAATGAGGAGGCTCAGGCCAGCAGCGTGATTACAGCACCGCCACCCACCATCGCAGAGGAGCAAGAGGATGGAGAGCCGGTTTTACAGGCCCCGCCCACTCGCCAACTCACTGCTCCGCCCACCGCTGCTACCTGCTCACCCCGCCCGACCGCCGCCATCTTTAAACCCAGAGAGCAGCTGATGCTCCGAgcaaacagcctgaaaaaagCCATCAGACAGATCATAGAGCACACAGAgagagcggTAGACGAGCAGAATGCTCAGACTGAGGAAGTGTTTGCAGCCCTGGCTCCtgaggaggaagatgaagatgatgaagagGATAAAGTGTCTCTCAGATCGTCCTACAGTGCCAGAGCTCGTCACCTACGGAGAGgtctaAAGGCTGGAATAACTGGTTCTCTGTCCAGTAGTTCAGTGATCAGTCGGTTGCTGGTGAACGCTGATCCATTCAATTGTGACCTGGAGAACTTTGACTGCTACACTGAGAAGTGTGTTATGAATAATTACTTTGGAATCGGACTGGACGCCAAAATCTCTCTGGACTTCAACAACAAGCGAGACGAGCACCCGGAGAAATGCAGGAGCCGCACTAAGAACATGATGTGGTATGGAGTTCTCGGAACAAAAGAGCTGCTACACAGAACCTATAAGAACCTGGAGCAGAGAGTTCTGCTGGAGTGTGATGGCCGGCCGATTCCTCTCCCAAGTCTGCAGGGCATTGCTGTGCTGAACATTCCAAGTTACGCTGGTGGAACCAATTTTTGGGGTGGAACCAAAGAGGATGACacGTTCACGGCTCCATCTTTTGATGACAAGATCTTGGAGGTGGTGGCGGTGTTCGGCAGCATGCAAATGGCTGTATCTCGAGTCATCAACCTGCAGCACCATCGCATAGCTCAGtgTCGCACAGTTAAGATCACCATCCTAGGGGACGAGGGTGTACCTGTGCAGGTGGACGGAGAGGCGTGGATTCAGCCACCCGGATACATCAGGATCATCCACAAGAACCGCACACAGACACTTACCAGAGAcagggCGTTTGAGAACACACTAAAGTCATGGGAAGATAAGCAGAGGTGTGATTTTCCGCGGCCCGTGTCCCAGCACTCCGTGCAGCCAGAGACCGTCTCTGAGGAGGAAATGGCTCAGATCAGCCTGTTTGGCCAGTCAGCAGGAGCACTGatacacagtaTTAGGGAGATTGCACAGACTCACCCCAGTGTGGAACAGGAGTTGGCACATGCAGTGAACGCCAGCTCTAAAGCTATGGACATGGTGTACGCGAACTCCAAAAACAACACGgGTCTGACCTGTAGTGTGGTGGTTCAGATGGTCAGTAATGTGAAAGCTCTACACAGTGAAACTGAACTACTGCTAGCAGGAAAGATGTGCCTGCAGTTGGACCCGCCGCAGCGTGAGCAGTTAGATGGAGCGTTATCTCCTGTAGCTCTGCAGCTGCGTGGACTGGCAGAGATCAGCTGGCTCAGTGCAGTCATCGATCCAGCCGACGACGAGGAACATGTGATGGATTTCTCGAAGCGGAGCCGCAGTGCTAAGTTCCGCCTGGTTCCCAAATTTAAGAgggacaaaaacaacaagaacaaagaGGCGTGTGCCACCCTCAGCCTGCCAGTGCATCAGTGGGGTGTAGAGGAGGTGGCAGCATGGCTAGAGCAGCTCTGTCTGTCGGAGTATAAGGAGATTTTTATCGGTCATGACGTGCGTGGGTCCGAGTTACTGCACCTGGAGAGAAGGGATCTTaagGATTTGGGCGTGACTAAGGTCGGTCACATGAAGCGAATCCTGCAGGGCATTAGAGATCTGAGTCGGAGCAGCACGGCTAGCGAAGCCTAGCATAACCAGACTTGAACTCATCTGACCAATTAGCTCACAGGGACCATCTTTCcccagccaatcagctcacaggGACCAGCACAGCCCAGCCAATCACCTTGCGGGGACCAGCACAgcccagccaatcagcttgcgaGGACCAGCTCAGTAATCTCAGCCAGAGCTTAACCAATCAGCACAGTGCCTTCAGCTCATACACCCATAAGATCACAGCCTTCGGTTACTCTGCCACACCGGCTGTGCGGGGGTCACTGTGTATGTATATGCGTGAGTGTGAGAGTATGTGAAAATGtgtgtctgaaaatgtgtgttttggttCAGTAAACAAAGACACTGTCAGTGTTATCCAAAGGGGTTCAGAGAGCTGAaccaatctgtctgtctgtgattggtcagagtgAGAGACTTTTACAAAGAGAGACATCTCAGTCTCTCAGCCTTCCACGCTCTCTAGATAATACTTAAACTCACACTCCTAATACACCCCAGCCCCCCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7997 lncRNA upstream 31418 23937252 ~ 24033261 (+) False G5895
TU8006 lncRNA downstream 849 24088651 ~ 24090482 (+) True G5898
TU8215 lncRNA downstream 20162 24107964 ~ 24108997 (+) True G6049
TU8218 lncRNA downstream 27145 24114947 ~ 24125362 (+) True G6051
XR_002650063.1 lncRNA downstream 165353 24253155 ~ 24253912 (+) True LOC111192653
TU8265 lncRNA downstream 183748 24271550 ~ 24276459 (+) True LOC111192656
XM_022670317.1 mRNA upstream 7969 24044397 ~ 24056710 (+) True LOC111192623
XM_022670326.1 mRNA upstream 7969 24044406 ~ 24056710 (+) False LOC111192623
XM_022670271.1 mRNA upstream 26342 24012645 ~ 24038337 (+) True atg16l1
XM_007237904.3 mRNA downstream 6474 24094276 ~ 24101233 (+) True ilkap
XM_015602648.2 mRNA downstream 6475 24094277 ~ 24101233 (+) False ilkap
XM_022670253.1 mRNA downstream 14756 24102558 ~ 24120298 (+) True LOC103047855
XM_022670255.1 mRNA downstream 14756 24102558 ~ 24116055 (+) False LOC103047855
XM_022670232.1 mRNA downstream 41482 24129284 ~ 24148571 (+) True LOC103042016
TU7890 other upstream 157205 23878152 ~ 23907474 (+) True LOC103022942
TU7964 other upstream 230849 23832236 ~ 23833830 (+) True G5871
TU7839 other upstream 713373 23312512 ~ 23351306 (+) False G5797
TU7837 other upstream 713633 23344496 ~ 23351046 (+) True G5797
TU7634 other upstream 1099755 22964060 ~ 22964924 (+) True G5646
XR_002650083.1 other downstream 1324392 25412194 ~ 25428351 (+) False LOC103027586
TU8949 other downstream 1952354 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 1952354 26040156 ~ 26046246 (+) False G6576
TU8951 other downstream 1955257 26043059 ~ 26046246 (+) False G6576
XR_002650136.1 other downstream 2831489 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile