RNA id: XM_022670287.1


Basic Information

Item Value
RNA id XM_022670287.1
length 4427
RNA type mRNA
GC content 0.46
exon number 18
gene id atg16l1
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 24012645 ~ 24038337 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCCTCTGGCGCTCTGGGCGGAAGAGCGGGCATGGCGGACCCGGATGTAGAGAGCGGAGTGGGCTGAGATCAGTTAttattacagttgtacaggttatatTGGTTATTATTGTTGATCCTGTTCAGCAGCGCTAAAATCCTTGATCACCTGCATCGATCACTGATCACTCTGATCaccacagagagagggagagagggagcacAGCGCGCGGAGAGGAACCGACAGaaaggTGTGTAGGAGATGGCGGGACGCAGGGTGGAGTGTACGTGGAAGAGACACGTTGTGGAGCAGCTAAAGCTGAGGGACCGAGTGCAGCGGCAGGCATTTGAGGAGCTCATACACCAGTataACAGGTTGCTGGAGAAGTCTGATCTGCAGGGAGTTCTGTCAGAGAGGCTGCAGACTGAGAAGTATGAGCTGCAGAACAGACATGACCTCAGcccaGGCGCTGAGTCTCTGCAGCAGGAAATGGCTCAGATCCGAATTCGGCACCAGGAGGAACTCACAGAGCTCCACAAGAAGCGTGGAGAGTTGGCCCAAAGTGTGATTGAACTAAATTATCAGATTCAGCAGAAGGACAAAGAAATCCAGAGCAATGAGGCCAAgatgtTGGAGTATCAGCAGCAGATCTCTCAGCTAGAGGGGGAATGTCGTGATTTGCGGAACTCTCTAGCGGATTTGGAGCGAGCCAATCAGACTCTGCGCGATGAATACGATGCTCTGCAGATCACGTTCAGCGCTCTGGAGGAAAAACTGAGGAAAACCACAGAGGATAATCAGGAGCTGGTGACCCGCTGGATGGCAGAAAAAGCTCAGGAGGCCAACAGACTCAATGCTGAGAACGAGAAGGACTGCAGGCGCAGACAAGCTAAATTGCAGAAGGATCTGGCAGATGCTGCCAAAGAGCCACTGCCTATTGACCCGGAAGATGACATCGAGGTCCTTTCTTCAGAGGACTCTGCAAAAGCACCAGGAGAGACGTCTCCAAGCAGACTGCCCAGCCGAGCACCTAgtAAACGTCTGTCTCAACCTCCCCCTGCTGGACTGCTGGACTCCATCTCCAACATCTtcggGCGTCGCTCGCTGAATTCTCATGGGACGTCTCCAGATAGTTCGGATGTTCCGTCTGGAGTGTGCGCGGAGGTCCGAGTGCCATCCACTGCGCTGCACACCTTCgaTGCACACGACGGCGAGGTTAACGCAGTGAGGTTCAGTCCTGGATCCCGTCTCCTAGCAACAGGAGGGATGGACCGTCGGGTGAAGCTGTGGGAGGTGGTAGCAGgTCGATGTGAACCTAAGGGGGCACTGACGGGCAGTAACGCTGGAATCACCAGTATTGAGTTTGACAGCGCTGGCTCATATCTTCTGGCTGCATCCAACGACTTCGCCAGCAGAATCTGGACTGTAGACGACTACAGGCTGAGGCACACACTGACCGGCCACAGCGGGAAGGTTCTGTCTGCACGGTTTCTGCTGGATAACGCTCGCATCGTCTCCGGCAGCTATGACCGGACACTCAAACTCTGGGATCTGCGCAGCAAAGTCTGTATGAAGACGGTGTTTGCGGGCTCCAGCTGTAACGACATTGTGTGCACGGAGCAGTGCGTGATGAGCGGACACTTCGATAAGAAGGTTCGATTCTGGGATATCCGGGCTGAGAGTATAGTGTGTGAGTTGGAGCTGTTGGGTCGTGTTACGTCTTTAGACCTGAATCACGATCGAACGGAACTGCTCACCTGTTCCCGTGACGACCTGGTAAAAATTATTGACCTACGCAACAACTCTGTGCGGCAGACCTTCAGTGCTCAGGGCTTCAAGTGTGGCTCTGACTTCACCCGAGTTACCTTTAGtccTGATGGGGGTTATGTAGCTGCGGGTTCTGCAGATGGTGTTCTGTACGTGTGGAACGTTCTCACAGGGAAACTCGACAAAACCCTGGATAAGAATCACAGCTCTGCTATTAACTCTGTGTCCTGGTCTCCGTCGGGAACCTACGTGGTCAGTGTGGAGAAGGGCAGCAAGGCGGTGCTTTGGTCTGACCTGTGATTGGTCTGCCTCCTCCCTGGCGCGATGTGATTGGACAAGGTGACGAAAGACGTCGCACTTTCTTCTCTGGCACTTGGACTGGATTTACTATGAAGGGGCGGAGCTTGAATCCTCTGGTTCTGAGAGACCGAACACTTTAACTGCATTCATATCAGCACTCCTGTatacacctgcacacacacacacacacacacacacacactatatatatatacacacacacactgtcgcACAAacgctctcactcacacacctaTCAGGAGAGACACGTGTGACAGTCTGACATCTGCTTTCCAAAAGATTTAAAGGAGTTGTTAGTATAACCACTGCTTGACAATgccatgagtgtgtgtgtacgtgtgtgattgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgctttttgTTCTTCTTGCCTTACATATTAAACTGCTCATGAAGtctatgctgtgtgtgtgtgtgtgtgtgggggtttgCCTGCAATATCTGAGTCTACCACTAGAGTGTGCTGCTATACAGAATTTCGGTGCAGCTCCTGCTCTCTGCTGATTGGGCGAGTTGGTCTCtgtggctcttaaagggaatttcCACCCGCTTATCGTTTCTGTTCTGCATTATTCAGGGTTTAAAGTTTTAGAAAATGGTTATGGATGCACAGGTTGGTTTAGGTGATCTGATCTCTTAGCCTTATTACACCAGGGCTGTGTACTGACGATACTGATCACGAAACAGTATACCACGATATACTGCAATACTGTAAACACAGTGAGAAACTGagattgtttaaatcaaatttcataaaagtacaaatattcTATCCTATTTATAAATTCTGAATAAGAAAGTTTGCTCTGAATTCAGTAAAAACGTTACAACACTGCTATCCAGggggcggggtttaaacacaacactaaattaaccacttctgacaccaatctttacatgtggCCTAGTATAACTTAATAGTTTGTATTAAAaagaatattgtgtttttataaatcGATACAGTAATGTAGAACAAAATATCACTTAAACCACTGACTAACCCATCAGCTGATAAAGAGTGAGTTTCTGCTACACATATTAATaactacacattaaataataacaatgctgtattaatgaaatattgtaatgttaAATCAAATACGatggttaaaaaataaacattccaGAAAATCCAGCTTGTGACAACACcgttaacaaaaataaaattaaacatggtGTAGGTAGCGCTGCCCTCAGTGCTGCAGTATTTAAACTACAACTACCGCAGTATtacattaatacaaaaatgataaataatataaactgcTGTTTGTTTATTGGTTGTTTGTTGGTATGATGTTTAATCTATAGCGTTTGTGCTTCTCTGAATATGATGGAAATCCAGACTGGATTTCTCAGTTTAGCTGCATAGTTTAGGCCCAGATTGGCGACTATCCAGTAGGACTGTACtcttataaatatacatatatgtgcTCAGTTCACCTTGTAGCATCAAGGCATTGCCAAGGTTATCTGTATTGTTGTACTGGTGAATGTAGAACATTGCTGAAAGATGGTGGACTTTCCCTTTAAGTACACATCAATGACATTTTTACAAATTTGTCAAATCCTTCCAATAAGTGTTTAATTCAAATATAAAtactaagtaaaaaaattgAAGTTAATAAGCATTGTAAAGAGcaattcacatttttatttcaaaatcaattttattttataatgaatggaccaatagaaatgctccaaaatgactttaaatggACTTGCATTGAAAGTGAagtaggacacacacacacactacacactcataCTTACTGTCTCAGCTTGTTAGAGACTCAGCTTGTTATGTAGCCTCACAGAGGTTTAAGCTGCCCTCATGTTTTGTAGATAATAAAGAGGTGGGTGTGGCTTTAAATTGATTGACAGCAGAATGAGCCAGTCAGTGCTGCACAGGTTAATCCCCCTTTTACATTGTGCAGACCCAGCGttaacccacacacactcacacacacactgtgtctcATTGGTTCTGCTGCATCATGTGAGTAAGGCTTGAGTTCAGCACCATACCAGAAGCATTGTGGGTCTGGCTAAAGTTGACCGCTGTATTTCATAGGCTAAAGCTGTGTATAAGTTATGATGAACTGATAGATGTAAatgaactgtgtgtgtatgtttgagaAATGTTTACACGCCAACAAACGTCTGACTCAGCCGAGTGTGTACTGTCCTTCATTAACCTGCACACCCACGTTTCTGATATTCTGTCCCTGTGGCACAGACTGCATGTATATACACAACTCCAGTTCCAGTAAATTTGGGAAGttgtgaaaaacataaataaaaacagattacaATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7994 lncRNA upstream 78293 23932650 ~ 23934352 (+) True G5893
TU7993 lncRNA upstream 82414 23927581 ~ 23930231 (+) True G5892
TU7894 lncRNA upstream 94261 23916071 ~ 23918384 (+) True G5830
TU7891 lncRNA upstream 105171 23876999 ~ 23907474 (+) False LOC103022942
TU7966 lncRNA upstream 165278 23839993 ~ 23847367 (+) True LOC103035426
TU8028 lncRNA downstream 42301 24080638 ~ 24081361 (+) True G5913
TU8006 lncRNA downstream 50314 24088651 ~ 24090482 (+) True G5898
TU8215 lncRNA downstream 69627 24107964 ~ 24108997 (+) True G6049
TU8218 lncRNA downstream 76610 24114947 ~ 24125362 (+) True G6051
XR_002650063.1 lncRNA downstream 214818 24253155 ~ 24253912 (+) True LOC111192653
XM_007239738.3 mRNA upstream 2030 24002130 ~ 24010615 (+) False LOC103021374
XM_022670387.1 mRNA upstream 2030 24004469 ~ 24010615 (+) True LOC103021374
XM_007239739.2 mRNA upstream 16372 23981517 ~ 23996273 (+) True clptm1
XM_022670399.1 mRNA upstream 107930 23878121 ~ 23904715 (+) False LOC103022942
XM_022670357.1 mRNA upstream 137153 23860045 ~ 23875492 (+) True gdpd1
XM_022670317.1 mRNA downstream 6060 24044397 ~ 24056710 (+) True LOC111192623
XM_022670326.1 mRNA downstream 6069 24044406 ~ 24056710 (+) False LOC111192623
XM_022670215.1 mRNA downstream 26342 24064679 ~ 24087802 (+) False dgkd
XM_022670223.1 mRNA downstream 26342 24064679 ~ 24087802 (+) False dgkd
XM_022670220.1 mRNA downstream 29006 24067343 ~ 24087802 (+) True dgkd
TU7890 other upstream 105171 23878152 ~ 23907474 (+) True LOC103022942
TU7964 other upstream 178815 23832236 ~ 23833830 (+) True G5871
TU7839 other upstream 661339 23312512 ~ 23351306 (+) False G5797
TU7837 other upstream 661599 23344496 ~ 23351046 (+) True G5797
TU7634 other upstream 1047721 22964060 ~ 22964924 (+) True G5646
XR_002650083.1 other downstream 1373857 25412194 ~ 25428351 (+) False LOC103027586
TU8949 other downstream 2001819 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 2001819 26040156 ~ 26046246 (+) False G6576
TU8951 other downstream 2004722 26043059 ~ 26046246 (+) False G6576
XR_002650136.1 other downstream 2880954 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile