RNA id: XM_022670326.1


Basic Information

Item Value
RNA id XM_022670326.1
length 1926
RNA type mRNA
GC content 0.46
exon number 16
gene id LOC111192623
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 24044397 ~ 24056710 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgcacacacacaactttGTGCCTGGGCATCTTGTGGAtacacgtatacacacacaggttCATCATGAGTCCCAAACACGTGATTTTTAAGAAGCTCTCCCGTGATAAATCAgTGGGTGTTTATTTGGGCAGGAGAGACTTTGTGGATCACTGTGATTTTGTTGATCCTGTTGATGGTGTGGTGCTGATTGATCCGGAGCAaacaaaaggaaagaaagTTTATGTTATGCTATCATGTACGTTCCGTTATGGCCGGGATGACATGGACGTGTTGGGGGTGGCGTTTCGGAGAGACATTTTCCTGTGCACGCGACAGGTTTACCCCCCACTGCAGGACGTAGAGCGCAGCATTCACACCAAATTACAGGAGAGACTTCTGCGCAAACTGGGGATCAACGCATACCCCTTCTTCTTTGAGTTTCCAGATAATCTGCCATGCTCTGTGGCGCTGCACCCTACACCCACTGATGTAGGAAAGCATTGTGCCGTGGAGTTTGAGGTGAAGGCGTTTTGTGCTGACAATCAAGATGAGAAAGCTCAGAAAAGGAGCTCAGTGCGCCTGGCCATCAGGAAGGTGCAGTATGCTCCTGATCAAGGAGGCCCAGCTCCATCTAATGAGACCACTTGTGAGTTCATGATGTCAGACAAGCCTCTCCACATGTCCATCTCTCTGGATAAAGATACGTATTATCATGGAGATACAATTCATGCCAATGTGGTAATCGATAACAGCTCCAGCAAAGACGTGAAAAACATCACAGTTTCAGtcGAGCAGATTACTAACGTGGTGCTGTACTCCAACGATAAGTACGTTAGAACTATCGCCTGTGATGAAAGTTCTGAGTCTGTGCCGTCTGGAACCAGCATGAAGAAAGTTTACTCGCTCCGTCCTCTGCTGGACAGCAACCGGGAGAAGCGTGGCCTGGCTGTGGACGGGAAACTGAAGCATGAGGACACCAACCTGGCCTCCTCTACCATAGTGAAAGCAGAGGTGCTGAAGGAGGTTCTTGGGATGGTGGTCTCCTACAGAGTGGTGGTTAAAGGCACTGCAGCTGGCATGATTGGATCCAgtgaggttACCGTGGACGTGCCATTCATACTCATGCACCCTAAACCTGATGCAGTCAAAGAAAGTGACGGGGACACTGACATGGTCTTTGAGGAGTTTAAGCGTTCCTGCCTAAGGGGACTCATTGGAGACGATGATGATTCCCCTGCTGAACCTTGAGACGCTGAGAAGGATCACCACGAAAACAATCAACACTGCGCTCGCTGCTCATTGAGGAATGGTTATAGTAGCTTATATGTGTTTATAGGTGTACATACTTTGAAGACTGGGCTTATGAACTAGTGTTTATATgttcgctggccactttattagaaacccctaccttgtgTTTCGACTAACTGGCTGCTTCATTGTATCCCCTTTTACTCCCCGGTAGAGGTATACAGTTCTAGGCTGTAATAAAGTTGTCTATGTAGAGTGCAGAATCAGCACCCTGTACTCAATTCACCATTAGTCCTTTTTCTTAAACACCTAAAATTTTCCAGCGAGTGCAGCTCTGTGGTTAAAAACAGGGGTTTCTAAACAGAAGTGGGCAGTAGCGTAAATGTGTACATGATGTGAGAGTCAGCTAATGGACTAGAAGGGAGTGGTCAgtggatttttagtttgtttagatGTAGGGAAGAGTATACAGGTGTAGTGAATGTACTTTCGAGGTATAGAGGTGTAGTAAATGTACATTAGAAGTGGATAGCTTATGGTATGTAGGGTTAGATGTATGTATATGGTAAAGCGTAAGGTAAGATAGGATGGATCTCAGGCAGTTTGAAGGCGGGCAGGTGGGGAGATGCAGGATGTTCTCTATTTGCTGTAGGACTGTCAATAATGCAaacattaaaaatcatttttaacataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7997 lncRNA upstream 11145 23937252 ~ 24033261 (+) False G5895
TU8028 lncRNA downstream 23928 24080638 ~ 24081361 (+) True G5913
TU8006 lncRNA downstream 31941 24088651 ~ 24090482 (+) True G5898
TU8215 lncRNA downstream 51254 24107964 ~ 24108997 (+) True G6049
TU8218 lncRNA downstream 58237 24114947 ~ 24125362 (+) True G6051
XR_002650063.1 lncRNA downstream 196445 24253155 ~ 24253912 (+) True LOC111192653
XM_022670271.1 mRNA upstream 6069 24012645 ~ 24038337 (+) True atg16l1
XM_022670287.1 mRNA upstream 6069 24012645 ~ 24038337 (+) False atg16l1
XM_022670279.1 mRNA upstream 6069 24013090 ~ 24038337 (+) False atg16l1
XM_007239738.3 mRNA upstream 33791 24002130 ~ 24010615 (+) False LOC103021374
XM_022670215.1 mRNA downstream 7969 24064679 ~ 24087802 (+) False dgkd
XM_022670223.1 mRNA downstream 7969 24064679 ~ 24087802 (+) False dgkd
XM_022670220.1 mRNA downstream 10633 24067343 ~ 24087802 (+) True dgkd
XM_022670227.1 mRNA downstream 15087 24071797 ~ 24087802 (+) False dgkd
XM_007237904.3 mRNA downstream 37566 24094276 ~ 24101233 (+) True ilkap
TU7890 other upstream 136932 23878152 ~ 23907474 (+) True LOC103022942
TU7964 other upstream 210576 23832236 ~ 23833830 (+) True G5871
TU7839 other upstream 693100 23312512 ~ 23351306 (+) False G5797
TU7837 other upstream 693360 23344496 ~ 23351046 (+) True G5797
TU7634 other upstream 1079482 22964060 ~ 22964924 (+) True G5646
XR_002650083.1 other downstream 1355484 25412194 ~ 25428351 (+) False LOC103027586
TU8949 other downstream 1983446 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 1983446 26040156 ~ 26046246 (+) False G6576
TU8951 other downstream 1986349 26043059 ~ 26046246 (+) False G6576
XR_002650136.1 other downstream 2862581 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile