RNA id: XM_022670407.1


Basic Information

Item Value
RNA id XM_022670407.1
length 2301
RNA type mRNA
GC content 0.46
exon number 1
gene id LOC103042333
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 24177344 ~ 24179644 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gacattgctgctcccgttctgcctttcactctgataactttttactgttttttataataACTACATTTTACTTTCAGGACTTcattactacattttacaatatactactGCAGTACCTAAGTACAAAAAATGTAGAACACTTTAATACTTCtacttaagtgtggagcttaaacACTTCAGCTTTTACTCAGGccacttttttgatagagcacttttACTTTATACATGCTCCTTTCTAACACAGATCCTCCCTCTCTTGGTGAGAGCTGGTCCTGGTGCAGAACATTGTGCAGATAGGGATCTGGAGAGTGGGagtcttattttctttctgctGTATGTTTAGTAATAACCATGGTCAGAGTCACCCACATGAGAAAGGCACAACAAACACAGCGTTACAGAAGCCCTCATCTTCACGAACCAACCCAAAAAGAGCTGATCACTTCCCATAACAAAGagtcagagagggagagagggtcAGCACCATTCCACCACTTTCCATCTCATTCAGGCGACACTCGGAGACTTCCACAGTCTCTTACATCTCTCTCGCTTCTTGGATGGGAATGCTTTAACTTTGGGATTTAAATGCGATTACCTCACCTTGTCTCTggatctgtgttttctgtggaCTTTGATCTACTAGTTCCATTTGGAAAGGTCTGATTTCCATGGTGagtttacctacctacctttacCTTGTTTCCTGATGCAGAAGTGTTCAGGAAGGGTTTGTCTATCATCAGTCTTTGGCAGTCAATTGTTATTGTTACTGCCACTGGGATAACTAGATTCTACCTCTCCTGCTGCTGCCAGAAAATGTCACAAGTGTAACCAGTTACATACCCTGGTTACTCCTGGACTCGCCCGTCATTGGCTCAACGTCCTCCTGGGCTGAGACCTTTCTCAGAACCTTTGTCTGCAGTAAAATATACAATGGTTGCTGCCTGTGAACTCATCGCTCTGTGTCTGGGTGTCATTGGTCTGGTGGGCACTTCCGCAACTACAGGCCTCCCCATGTGGAAGGTGACGGCCTTCATCCAGGAGAACATCATAGTCATGGAGACTCGCTGGGAGGGTCTGTGGATGAACTGCTTCCGACAAGCCAACATCCGGATGCAGTGCAAAGTGTACGACTCCCTGCTGTACCTTCCGGCGGAGCTCCAAGCCGCCCGAGGCCTCATGTGTTCTGCTGTTGCTTTGAGTTTTTTGGGACTCATAACATCCTTTCCAGGCCTCGACAGCACAGCCTGCCTTCAAGGCCAACCTCGCATCAAGTCCCTCCTCCTGGCGATCGCTGGAGCAATGCTGGTCATGGCTGCCCTCTGCGTCATCATCCCTGTCTCCTGGACAGCTCACGTCATCATCCAGGACTTCTACAACCCTCTGCTGCTGGACGCCCAGCGCAGGGAGCTGGGTGAGGCGCTCTACATCGGTTGGGTGACGGGAGCAATTCTCTTTGTCTCTGGTGTGCTTTTCCTGTCCTGCCGATCTTCTTCAAAATACGGTTTGTCTCAGCTGTACCAGCCCGTCTACACGACCAACAGCTCAAACCTATCCCAAACCTACCCCTTCAGGCCAGTGCCGAGCTCCATCAACTCCTTACCCCAGCAGCCGCTCCTACAAGGCCACAACCTGACCCATCAGCAGTCATTATCTTCAACCTACAGCCCTGTGGCGGTGAACACTGCGAGCCAGCCTGTGCTCTACAACCCCCAACTCGCAGCTCCCAGTGTTCCCGTGGTGTACAATGCCCACCAGCACCAACAACTGTCTGCACAGGACTTGGAGAGACTTTCCAATCACAGGAGCTCTGCCCACATCAGCCTCATGTCTGCATCCCGGCCATCGGCACAGCCCACCACACAACTACCGGTTGTGTATGGATACGGATACTCCAGAAACGGGTCGGACAACACAGTGTCCTCAGCCAACTCCGGAGTGTACATTTAAAAACCCTCCCCATCCAAACATTCTGCACACAGAATGCAAATCAGAGGAAATTATTGTAGTTAATTGGATAAATTGGTCttatgtgtaatgtgtgttttaaaccttatataaatatatataaatgcttcTAGCATTGTGAAGATTTTCATTCTGAACTGTGAAATGATCATTTCTGTTCTGAAACGATTTTATTTGTAGTTATAATGTATTAAATTTTAAGCTATGAAAGTTTCCTTGTACATACCAGTGCTCACATAGTATTACTTAGACATAAATAGGGATATTAAtggttttaaaggtttaaaagcTGTGTTGTGTGAttctatttaataaaatgttaaatgaaaA

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8218 lncRNA upstream 51982 24114947 ~ 24125362 (+) True G6051
TU8215 lncRNA upstream 68347 24107964 ~ 24108997 (+) True G6049
TU8006 lncRNA upstream 86862 24088651 ~ 24090482 (+) True G5898
TU8028 lncRNA upstream 95983 24080638 ~ 24081361 (+) True G5913
TU8003 lncRNA upstream 144083 24031078 ~ 24033261 (+) True G5895
XR_002650063.1 lncRNA downstream 73511 24253155 ~ 24253912 (+) True LOC111192653
TU8265 lncRNA downstream 91906 24271550 ~ 24276459 (+) True LOC111192656
XR_002650065.1 lncRNA downstream 94848 24274492 ~ 24279468 (+) False LOC111192656
TU8259 lncRNA downstream 96923 24276567 ~ 24279467 (+) False LOC111192656
TU8404 lncRNA downstream 204791 24384435 ~ 24384926 (+) True G6167
XM_007237911.3 mRNA upstream 1527 24173386 ~ 24175817 (+) True LOC103043067
XM_015602650.2 mRNA upstream 6707 24166477 ~ 24170637 (+) True LOC107196838
XM_022670361.1 mRNA upstream 15902 24157595 ~ 24161442 (+) True LOC111192631
XM_022670393.1 mRNA upstream 20396 24155639 ~ 24156948 (+) True LOC103043883
XM_022670232.1 mRNA upstream 28773 24129284 ~ 24148571 (+) True LOC103042016
XM_022670412.1 mRNA downstream 1915 24181559 ~ 24216852 (+) True LOC103021580
XM_022670416.1 mRNA downstream 1915 24181559 ~ 24216852 (+) False LOC103021580
XM_022670424.1 mRNA downstream 56207 24235851 ~ 24248495 (+) True usp16
XM_022671472.1 mRNA downstream 74284 24253928 ~ 24261667 (+) True farsb
XM_007237925.3 mRNA downstream 103678 24283322 ~ 24287126 (+) True LOC103047234
TU7890 other upstream 269870 23878152 ~ 23907474 (+) True LOC103022942
TU7964 other upstream 343514 23832236 ~ 23833830 (+) True G5871
TU7839 other upstream 826038 23312512 ~ 23351306 (+) False G5797
TU7837 other upstream 826298 23344496 ~ 23351046 (+) True G5797
TU7634 other upstream 1212420 22964060 ~ 22964924 (+) True G5646
XR_002650083.1 other downstream 1232550 25412194 ~ 25428351 (+) False LOC103027586
TU8949 other downstream 1860512 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 1860512 26040156 ~ 26046246 (+) False G6576
TU8951 other downstream 1863415 26043059 ~ 26046246 (+) False G6576
XR_002650136.1 other downstream 2739647 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile