RNA id: XM_022670716.1


Basic Information

Item Value
RNA id XM_022670716.1
length 7628
RNA type mRNA
GC content 0.47
exon number 26
gene id cluh
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 25551222 ~ 25583981 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAGCGGATGCTGTAGCACATggaaagtgtgtatgtgtgtaccgCTGGAAGGTTATCGCTGCCTCTTACACACAGAGCGGACACTGTGGGCACAGTGCAGCTGCGGTCGTAATGAACGGGAACGCAGGGCACGACCAAGCCGAAGAGGCCGAGTCTAAACAGGACGGCAGCGGCGATGCTGACCCTAGCGACGACGCCAATGAACAGGAAGTAATTGTAATTCAGGACACTGGCTTCACTGTGAAGATTCAGGCACCTGGCACTGAGCCCTTCGACCTGCAGGTCTCTCCACAGGAGATGGTGCAGGAAATACACCAGGTCCTGATGGATCGTGAGGACACCTGCCATCGCACCTGCTTCTCCCTGCAGCTAGATGGCAATGTGCTGGACAACTTTGCAGAGCTAAAGTCCATCGAGGGCCTTCAAGAGGGGTCCCTACTCAAGGTGGTAGAAGAACCCTATACAGTTCGCGAGGCTCGCATTCACGTTCGCCACATCAGAGACCTGTTGAAGAGTTTGGATCCCTCAGATTCCTACAATGGAGTGGACTGCAACTCTTTGTCTTTCCTCAGTGTCTTCACAGATGGAGATCTGGGAGATAGTGGCAAACGCAAAAAGAAAGGTAGTGAACTTGAGCAGATCGACTGCACTCCTCCCGAACACATTCTGCCTGGCAGCAAAGACCGTCCCCTTGTACCTCTCCAGCCACAGAACAAAGACTGGAAGCCACTGCAGTGCCTGAAGGTCCTCACAATGAGTGGTTGGAACCCTCCACCTGGCAACAGAAAGATGCACGGAGACCTTATGTACTTGTTCATTGTGACTGTAGAAGAGAGGCACGTCAGCATCACTGCCTCCACCCGCGGATTCTACCTCAACCAGTCTACCACCTACACTTTCAACCCTAAGCCTGCCAACCCCAGCTTCCTGAGCCACTCTCTGGTAGAACTACTGAGCCAGATCAGCCCGGCCTTTAAGAAGAACTTCACTGCCCTGCAAAAGAAGAGAGTACAAAGACATCCATTCGAAAGAATAGCCACACCATTCCAGGTGTACAGCTGGACTGCTCCACAGATTGATCATGCCATGGACTGTGTGAGGGCAGAGGATGCCTATACCTCCCGTTTGGGTTATGAGGAACACATTCCTGGCCAGACCAGAGACTGGAACGAGGAGCTGCAGACTACTAGAGAACTCGCTCGCAAGAACCTTCCTGAGCGATTGCTGAGGGAGCGAGCCATTTTCAAGGTTCATAGTGACTTTGCTGCAGCTGCCACACGTGGAGCCATGGCTGTGATTGACGGCAATGTCATGGCCATTAACCCTGGAGAGGAGACCCGCATGCAGATGTTCATCTGGAACAACATCTTCTTCAGCTTGGGCTTTGACGTAAGGGATCATTACAAAGAGCTTGGCGGAGATGCTGCGGCTCATGCTGCTCCCACCAATGACCTTAACGGTGTGAGGGCGTATGGGGCTGTGGACGTTGAAGGTCTCTACACACTGGGCACTGTGGTGGTGGATTACAGGGGCTACCGTGTAACTGCCCAGTCCATCATCCCTGGAATCCTGGAACGTGAGCAGGAGCAGAGCGTCATCTATGGATCCATCGACTTCGGGAAGACTGTGATGTCCCACCCAAAATAcctggagctgctggagaagACCAGTCGGCCTCTGAAGGTACAGCGTCACGCTGTCCTGAATGAGAAGGACTCTGCTGTAGAGCTCTGCTCATCTGTGGAGTGTAAGGGCATCATCGGCAACGACGGCCGCCACTACATCCTGGATCTTCTCCGCACTTTCCCTCCTGACCTCAACTTCCTGCCTGTGGAAGGGGAGGAGCTAAGCCCTGAGAGCCAGAAGCAGGGATTCCCTCGACAGCACCGCCACCGCCTGGCTTGCCTGCGCCAGGAGCTCATCGAAGCCTTTGTAGAGCACAGGTATCTCCTTTTCATGAAGATGGCAGCACTCCAGCTAATGCAGCAAAAAGCCAACAAAGAAAGTAAGACTGCAGCCTTGCCTGAGAGCATCACTGCTGAGACTGTGTCTGATAGCAAGCCAGCAGCGGCTCCAGAGGCCTCTGAAGCTGCAGCCCCAGCCTTTGACTCGCCGACCTCCTCAGAATCTACGCTGACGCCTGAGGACACAGCGGACTCTGCTTCAGAGACCTCAGCTACAGAAAACTCCGCAGCTCCCACAGCGACCACCAACGGTACACACGAACTCACACTTCCAGAGAGCCAGAACGGAGGCTGTGACAGTCCTCTGGAGGGTAAGGAGGCTGATGAAACTATACCAGGACTAGCTCAGGCTAAAGAGCTGGCTGAGTCTTTAGCCACAGACGATGGATCCGGTATTGACCCCAAAAGTCGAGAAGTTGTCCTCAATGCCTGCAAAGCCGTGGGCTCAATCAGCAACACTTCCTTTGACATTCGCTTCAACCCAGATATCTTCTCCCCAGGTGTGCGTTTCCCAGAAGACAGTGCAGAGGACATCCAGAAGCAGAAGCAGCTTCTGAAAGATGCTGCAGCCTTCCTGGTTTCCTGTCAAATTCCCTCCTTGataAAGGACTGTTTAGATCACACTGCCCTACCAATGGATGGAGCCACAATGACTGAGGCCCTCCATCAGCGAGGCATCAATGTGCGCTACCTTGGCAATGTGCTGGAGTTTGTGGACAAGATGCCAGCCAAACCACAGCTGGAGCATGTCTATAGAATTGGAATCACTGAGCTGATCACCAGATGTACAAAGCATATTTTTAAGACCTACCTCCAGGGTGTGGAGCTCTCAGCCCTGTCTGCTGCTGTAAGCCACTTCCTGAACTGTTTCCTGAGCTCGTTCCCCGATGCAGTGGCCCACCTGCCTGCAGATGAACTGGTATCGCGcaagaagaacaagaaaaggCGGAATAGAGTGCCGGGGGGAGGAGATAACACGGCCTGGGCAAGCCTGACCCCCAGTGAGCTGTGGAAAAACATTGCCTCTGAGGCCCTCAGTTACTATCACTTCACTCTACAATGTGAGAGTGTGGACCAGGCAGTGGAGAAATACGGCCTGCAGAAAATCACCCTCCTGAGGGAAATCTCGGTCAAAGCTGGCATCCAGATCCTGATAAAAGAATACAACTTCGATAGCCGCCACAAGCCCGCCTTCACTGAGGAAGACATCCTGAACATCTTCCCAGTTGTAAAGCATGTCAACCCCAAAGCCTCTGATGCCTTCCACTTCTTCCAGAGCGGGCAGGCTAAGGTCCAGCAAGGTTTCCTTAAAGAAGGCTGTGAACTCATTAACGAAGCCTTGAACCTCTTTAACAACGTGTATGGAGCCATGCACGTGGAGATCTGTGCCTGTCTGCGCCTGCTGGCCCGTCTCAACTACATCATTGGAGACCATCCTGAGGCCCTCAGTAACCAACAGAAGGCTGTTCTGATGAGTGAGAGAGTGCTGGGTATAGAACATCCCAACACTATTCAAGAATATatgcaCTTGGCGCTGTACTGCTTTGCCAACGGCCAGCTGTCCACTGCCCTGAAACTGCTATACCGTGCCCGCTATCTCATGCTAATGGTGTGTGGGGAGGACCATCCTGAGATGGCTCTACTAGATAGCAATATTGGTCTGGTGCTACATGGAGTGATGGAGTATGATCTGTCTCTACGCTTCCTTGAAAATGCCTTGTCCATTAACTCCAAATACCATGGTCCCCGATCCCTCAAAGTTGCACTCAGtCATCACCTGGTGGCCCGAGTGTATGAAAGCAAGGCTGAGTTCCGCTCCGCCCTACAGCATGAGAAGGAGGGCTACACCATCTACAAGAACCAGGTTGGTGAAGCCCATGAGAAGACAAAGGAGAGTTCTGACTACCTGAAGTACCTCACTCAGCAGGCTGTGGCATTACAAAGAACCATGAATGAGATCTACAAGAATGGTTCCAACGCTAGCATCATGCCTCTCAAATTTACAGCTCCAAGCATGGCCAGTGTTCTGGAGCAGCTCAATATCATCAACGGCATCATCTTTATTCCTCTCAGCCAAAAGGACCTAGAGAACCTGAAGGCCGAGGTGCAGCGCCGGCAGCAGCTGCAGGACTCTGGGAAGATTGAGGAACAACAGGAGGACGGTCAGCTCGCGCTTGACGACAAGATACCTGTTGACGATTAACCCCACACCCACCACCCCTGCCAGGGGAGGCCATGATGCAACAGCCATCTGCTTGAACCTGTGGACCTGAGAACTAAGCTGTGTAATTTAAAATGAGTATATTTGAGCTTAAAGGGAGGGGAGGGCCAGGGACCGGGACAGGCAGGGAGGGAGATGTACAAACGAGCAGGACAGAGCGTCACAAAGACAGCGGAACCAGCGTTTAACACGGGAGGTCTGAGGGCCATGAGATACCATGGCCTACTTGAGGAGAGAACGGAGAGAAAACCAAGATTTTACTGAGATTTTTCTGCCTGTGTGAGTGTGGATGTTTGTAAAGCGAGAGGTGACTGAGGATGACCATGACATTGTATACCAGAGCCTTATTCATTCTTCCATCTGTCTGTTCATCTaaacatccatccatgcatttaTTTGTTGGTTCATTTGTTTGTTCATCCAGCTATCCTTCCATGCATCACCCATCTCCCAGCCCAGCCAGCCAGCCCTCCTATTCTCATCTATTCACGTCTCCTCATCCAGGACTTCCACCATTTTTTCCCTAAACCCAGCATGGGTAAAACAAAAACCCACATTTTCCCCCTATATCCTTCTCCCATCTCCAAACACCACTCCCAGCACACAAACCTGTCTGAAAACTCAGGTGACTTCTACACTGCACTAAACAAGATCGGGACAAATTTGCCGCTAAATTCAGAGCAGAAAGATACCCAAGAAACCCAATGGAGGCTTTAGAAAGTGCGCATTACGGTCTGCAAGGCTTAAAGACCTATTACAACCATTGATCCTCATGTATCCAATACAGTTGACATTTATTTCTGTGGTTTACCCAGAGTCGTGGCTGCTGTGTCTATACAACTCTGCACTCTGATTTTGATGATCTCTTTGTAAAAATTGAATGGGGATGGGGAATTATTAAGCCATTTTATATTCTTCAtatatctgtttaatttaagcCATGACTGTtttatacagatatatatatggatatgaTATAACATGGAAAGATGGTACATGTTCATCCATCTGTGGGGGATTTTGATGACAGAATTGTAATTTAACTGATCAAGAATTGCAGATTCAAATTGTTTAAAGCTTCAAATTGATCTATAGACTCTCGATGATAAATAGTACTAGCAGTgcagttttttgtgtgtgtgttctttgttttgttataGTAGTGCAGAGAGATATTCTGAGAGGATGAGCTCATTCTTCTTCTactactatacactactatTACTTCAGCTGCTGTAACAATCATTATTAGCAGGAAGACTATTGTGAACTTGAAGCTTAGAGGAGCATACAGTAGTAATTGGTCCCTCAGCATGGCAGATGATCTGCCATTTAATGTACTGTAGTGAGTTACGTAATGAACCCACTCAGCATATCTGATCTATTGGACTTTCTTTGGATGGTGGTTCAGTATAGCTTTCTGTCCATTTTTCTCCCCAGCAGTAGACACTGACTTTTCACATGTTCCCTGTTATCTCTTGCCAGTATTTAGTGCACTTTCTTTCCGCTGCTGTTACCATCCAGTACCACTAGATAAAAAGGGGTGGGGTGAGAGTcgttgcttttttttaatgtaatgtaccaaaaatgaaaaaaagtggACAGGGTTGTGTTTGCTTGTATAAATGCTGTATGGGTGGGCTTGACCCTCCAAACCCAAGTTCAACTTGTTGCTGTGTTTGAGTATGACTAAGTATGTATGATTGAATGTGTTTTAAAGCAATAGAAATGCTGGATCTGGCCTTTTTTATGGTTCTGCTGTGGCCTGCCTGCTGCACCTAGATCCAAGACAGACTGGTacacacatgttttttttttttcttttctttttttcttttttttttaggttcctGTTAAAAGTTCAAAGTTGTGggttgttaaaaatatatatggggaAGAAGATACTGTTCCACGCTCATAATCTGTTCATATTCCTCCTGCTcatgcacaaaaacacagagcatGTTCTAATGTGTGCCTATCTGTGCTTTGTATTGAAACCAGGCTCGTATTGTCTTTCTATGCCTTTCTATGTCTTTGAAAGGGATTGAAAAAGTCCTGTGTTCTCTTCCTTTGGCCTGCCAGTGACTGTGGAGGAGATGCACACATAATTTACTGGCAAGTCTCCAGTGGCAGTACACTCAGTCACCACTAAGAGGTGCTCTAGTCTAGACATTCATTGGCAAATTATTTCAttgttaaagaaaataataaagtcGGTTTATGATGGAGTACAAAGCTACCATATCATATTTACTAGCTTTAAAACTGTCAGTACAGGTGATCTCAAGCTGATGTTCACCAGGCTTTGTGTTCTAATAATTAAATGCTGATACTAGTTCTTTCTGAATGTTGTAAATGGCTGGACAATATTGAACAATCATCAGATCTCCTTTATGTAACTGCATAGATAGATAGCTCCATGTGTAAACATATCTAAATATCTGATTGGATGTACTAATCACACTTCTTTCATGGTGTTATCAGTTCAACAGCAAAGgaattctttccttttttttcttttctctttttcagtggtGTGAGTTCTTGCATGACAAACCAGTTTATGTCATCTAGATATTAAGCACCGACTGGTTCAGATTCAGATTTTGTATGTAGGGAAAGAGGGTGCAATATATGACATTAAGTAATGTAGCGTTTTTTTGGATTACAGTTTtaaactggaaatatctgtctTTTGCAGATACTGAGCTTACCCTGAGCTTTGTTGTATAACCCTTCAGACTAACTACCGGTAGTCTCCTCctgtattttattcacaaaaatGTGAATATCTCTCTTTTGTGAAAGTTTGACCATGATATAAAAacattgtgtttcttttttgtttttgaaactCCAAAGGAACaaagaagcaaagaaaaaaaatcattgcacAAATGCATTTGAAGATTTTCCTTCTCCTTCAGTCTGCTTCCTCCCAATTAACATAACAGAACCTCTCTCCACCTTCCTTCTCTGGCACAGCTTTCGTATGTTTGCTCACACGGCTATGATCTGGTGTTAGCCCAAAGCTCAGCCATAAAGCTGTCACAACAGCAGCTGTCATCCAAGAGTCcaacagtcagtcagtcagcatGATGGTACACTGCGTCCTGGATGGAAGGCCTGTCTGGTGTGGGACGCAGCCAGCAGCGTCTGTCTGTTCAGTCCACCTCAGCGTCACCTGCTGTCAAATGTACACATAACATAACCATACCTCTTGGTGTGTGTGGGAGCTGAGgagatgtttttattattatttttttttctctcttctaaaTTGCAAGATTTGTCTGGCCCTTTGTGTGtctgctttttcttttctcttgttttctttgatgtgGTCTCTGTCTGTTGCTGCCCATAAATAACAATCTAATTATTTTTGATCTGAGTATgcttttgtaataaaaaataattaaagaaactaGCAAATAACA

Function

GO:

id name namespace
GO:0048312 intracellular distribution of mitochondria biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8810 lncRNA upstream 4667 25548738 ~ 25549685 (+) True G6464
TU8786 lncRNA upstream 50767 25503002 ~ 25503585 (+) True G6446
TU8784 lncRNA upstream 53167 25490214 ~ 25501185 (+) False G6445
TU8785 lncRNA upstream 53167 25499127 ~ 25501185 (+) True G6445
TU8778 lncRNA upstream 80166 25470677 ~ 25474186 (+) True G6441
TU8873 lncRNA downstream 212641 25796622 ~ 25797186 (+) True G6514
TU8875 lncRNA downstream 214937 25798918 ~ 25799741 (+) True G6516
XR_002650097.1 lncRNA downstream 280405 25864386 ~ 25887741 (+) False LOC111192696
TU8926 lncRNA downstream 280464 25864445 ~ 25888817 (+) True LOC111192696
TU8939 lncRNA downstream 376500 25960481 ~ 25997692 (+) True G6567
XM_007245915.3 mRNA upstream 5957 25530149 ~ 25548395 (+) True ccdc92b
XM_007245910.3 mRNA upstream 29897 25482105 ~ 25524455 (+) True LOC103028751
XM_007245906.3 mRNA upstream 126001 25412194 ~ 25428351 (+) True LOC103027586
XM_022670632.1 mRNA upstream 156818 25391010 ~ 25397534 (+) True LOC103027284
XM_007245916.3 mRNA downstream 2798 25586779 ~ 25624804 (+) True LOC103030333
XM_022670724.1 mRNA downstream 42354 25626335 ~ 25676963 (+) False mettl16
XM_022670722.1 mRNA downstream 42355 25626336 ~ 25676963 (+) True mettl16
XM_022670741.1 mRNA downstream 97095 25681076 ~ 25713432 (+) True mnt
XM_007245922.3 mRNA downstream 97124 25681105 ~ 25713432 (+) False mnt
XR_002650083.1 other upstream 126001 25412194 ~ 25428351 (+) False LOC103027586
TU7890 other upstream 1646878 23878152 ~ 23907474 (+) True LOC103022942
TU7964 other upstream 1720522 23832236 ~ 23833830 (+) True G5871
TU7839 other upstream 2203046 23312512 ~ 23351306 (+) False G5797
TU8949 other downstream 456175 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 456175 26040156 ~ 26046246 (+) False G6576
TU8951 other downstream 459078 26043059 ~ 26046246 (+) False G6576
XR_002650136.1 other downstream 1335310 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile