RNA id: XM_022671129.1


Basic Information

Item Value
RNA id XM_022671129.1
length 1670
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC111192769
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 9756836 ~ 9759186 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGATCACACCAGTGCTTTACTGAACTGGAGATCCCACTGCGCTTTACTGCTCTCTAACTCAGCCCTACACTCAACTCTACACCTTCACCAGCGGCTCTACTGCGAGTCGCTGGTGATCCACACAACACCGTTCTGCTTTAACTGActttcaatcaaatacagttTTATTGCATCCGGATCTACACAAACAGGTTTTTACACTTtgtacaccacacactttcaacctcacactttctacaccacacaccttatacactttttacaccacacactttTACCACACCTACATCTACACCAGCAGTATCTTTAACATCATCAACATGGCCAGCTCATCGGAGCAGGTTCTTCATCTCATCcgtgaagaggaggagaagaagaaacgGGGAGAGAAGAGGACCTGGTCTGAGCTGTTCCCTGAAGATCCTGCAGCTCATGAAGATCCAGCAGCTCCTGAAGATCCAGCAGTGAAGAGGAGGAAGACGCAGACCTCGACCACTGTTCTTGTTCTTACGCACAGGACGGTCGTCAGGAACGTGTTTTGTTCTCAGCTGCTGAGGTTGGTAGGAGAGTTCTTGTGCCGCCGTTGTCGACTCCTCGCGGGTCTTCGTCCCACCGTTCCTCCGTTTTGGATTCAGAACGTGGACGTGTCGCTGACCGTGCTCGGAGCTCAGCAGCAGTCCTTCATCTGCTCAGGCACCGTGGCCTTTCTCTACATGCTGCTCCGTGACTCTGTCTCGGCAGAGGTGTCCAGCGTGGAGGAGCTGCGGGCGGTGCTCCTCTCCTGCCTGTATGTATCGTACGCATACATCGGCCATGAGCTACACTATCCAGCATGGCCTTTCATCATGAAGACCGACAGGCAGACATTTTGGAAGCGAACACTGGACATCACCAAGCGCATGAGCGGTAAAATGCTCCACATCAACACCTCTCCAGATGTCTTCGCCAAGGTCATTTCTGACCTGAAGAACAAGACAGACCTTTAAttagtattttacattttaaaccacaTATTAGAAAACACTTaatactattaaatatttactattaCTTCTAGGAATAAGGACACCCAGTGTAGCATAGCAAGAAAACTAAATAgataatttactaaaaaaataataattattataagtagttccgaattaaattacatttgcaGGGCACTTGAACATAACTGGACCAGACTTGGGACATTAGAAAGACGTGGACGAACTGGTCGGTACGCAGGGCATGAATCTTCTAAGCACGTTCAGCTGTTCAGTGAAGTGTCGTTAGCGACGGTTCTTAAAGCTGCAGTGTCTCTGGCTTCATGTGTTTTGGAGGCGGCACATGTTAGCTAGCCTTCACTGTTCCAGCTTGGTGGCAGCGTATGTGTGAAGAAGAGACATGGACAAAGAGGAAGACAGTGATAGAAAATGAGGAATTGTTTAACACAGGGAGGGACAGAGATCAGGACAGGGACGGTAACATGGATAAGAACAAGGACAGTAACGGGACGGGACACATGCTGGATAATAGAAGTGGACCTGAAGACGAGATGTGAGCTAGAAATCGGTGGATCAGGTTTTTACAGGTGACTGGAAAGAGAAACTGGATGGTGGACTGAAGACTGGACACAGTGAATAAACAATggctatatatttatttattatctatatatttagtttagt

Function

GO:

id name namespace
GO:0045860 positive regulation of protein kinase activity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3319 lncRNA upstream 4705 9751459 ~ 9752131 (+) True G2513
TU3294 lncRNA upstream 250859 9505710 ~ 9505977 (+) True G2491
TU3287 lncRNA upstream 265204 9491380 ~ 9491632 (+) True G2485
TU3286 lncRNA upstream 265538 9490620 ~ 9491298 (+) True G2484
TU3283 lncRNA upstream 266894 9485560 ~ 9489942 (+) True G2481
TU3353 lncRNA downstream 5899 9765085 ~ 9765945 (+) True G2539
TU3358 lncRNA downstream 12250 9771436 ~ 9772691 (+) True G2543
TU3363 lncRNA downstream 22307 9781493 ~ 9782062 (+) True G2547
TU3371 lncRNA downstream 48024 9807210 ~ 9819840 (+) True G2554
TU3376 lncRNA downstream 87816 9847002 ~ 9847841 (+) True G2559
XM_015604160.2 mRNA upstream 13345 9634093 ~ 9743491 (+) True LOC103039705
XM_007229235.3 mRNA upstream 13345 9634094 ~ 9743491 (+) False LOC103039705
XM_022681592.1 mRNA upstream 13345 9634095 ~ 9743491 (+) False LOC103039705
XM_007229236.3 mRNA upstream 13345 9634096 ~ 9743491 (+) False LOC103039705
XM_007229233.3 mRNA upstream 156004 9572520 ~ 9600832 (+) True LOC103038783
XM_007229240.3 mRNA downstream 150366 9909552 ~ 9971315 (+) True LOC103041157
XM_022682063.1 mRNA downstream 232387 9991573 ~ 10006311 (+) False LOC103041662
XM_022682027.1 mRNA downstream 232388 9991574 ~ 10006311 (+) True LOC103041662
XM_007229244.2 mRNA downstream 415095 10174281 ~ 10192344 (+) True LOC103042389
XM_022682163.1 mRNA downstream 420664 10179850 ~ 10188719 (+) False LOC103042389
XR_001518524.2 other upstream 14371 9634094 ~ 9742465 (+) False LOC103039705
TU3313 other upstream 86711 9631865 ~ 9670125 (+) True G2509
TU3170 other upstream 799444 8944479 ~ 8957392 (+) True lyrm9
TU3168 other upstream 809520 8944479 ~ 8947316 (+) False lyrm9
TU3112 other upstream 1021884 8732723 ~ 8734952 (+) True G2358
TU3788 other downstream 1514812 11273998 ~ 11279159 (+) False LOC103029949
TU3793 other downstream 1528945 11288131 ~ 11288846 (+) True G2910
TU4041 other downstream 2165264 11924450 ~ 11927250 (+) True G3096
TU4335 other downstream 3223439 12982625 ~ 12984269 (+) True G3313
TU4998 other downstream 5201987 14961173 ~ 14963583 (+) True G3736

Expression Profile