RNA id: XM_022671161.1


Basic Information

Item Value
RNA id XM_022671161.1
length 1330
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC103021718
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22862378 ~ 22867050 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTTTCTCTTTAATGGTTTCTTGGTGTTGATGGGGTTTCAGGGCACATGAGGTTTGAGTAGAAGCAGGTTAATAACTAGGCCCACTTGGCCTCGTCCAGAGACAGCTCAACTAATCAGAAGGAATGAGCAGGACAGGATTAGTGAAATCCAACCTCAGATTATTTCTCAGTCTCCTAAAGCTTGCGCCAGGTCTTCACTTCCTGCTCAGCTGTTTCATTCTCTGTCCAGGTTATCTAGGCTGTTGCTGCTGGTATTCTCTAAAAACAAaattgttttttactcacttgaTACTTGTCCATTTTCTCCAGTAGCATTAGTTCTGGGAAGATTAGCTTGGTACTTCTCTTGAGGCTGAAGGAAACTCTTAATTAACTTTATATTGCGAGGAAAAGGCACTTGCATCGGTGGAAAGTCTACATTCTGAACGTCTACCAAGAACGACTTGGACTAAAATGATGGGAATGGGAGTTTATCTACATACAGATGGATTGAGAGTGGCTACCACAGAGGATTTGGATAGCTGGGAGCAAGAACGGGAGATGTTCGACCCAAACGTTCGCCTCTTTGTGGCTCTTTTCTCGTACAACCCTGCTGTGATGTCGCCGAACCCTGAGACGATGGAGGAGGAGCTGTCTTTTGAACAAGGGCAGATTATTAAGGTTTTTGGTGATAAAGATGACGATGGCTTCTACCAAGGGGAACTGGCTGGTCACTTCGGGTTTGTGCCAAGTAATATGGTGTCTGAGATCCCTGTAGAAGATGGAGAACTCAAACTTCATCTGTTTAAACAGGGATTCCTTCCTGAGGAGTCGCCAGAAAACTCAAGagCACCGAGTGAGTTATCCACTGTGCCTGATGATGTGGCAGTCCACAGGATGGTGGCCCTTTTCGATTATGACCCCTGGGAAAGCTCCCCCAACATGGACATTGAGGAAGAGCTTCCTTTCCGAGCAGGAGATATAATCTATGTTTTTGGAGATGTGGACAGTGATGGTTTTTATTATGGAGATCTTCATGGGTATCGTGGTCTTGTGCCCTCAAATTTTCTTCAACCGCTGCCTTGGAACTGATAATAATGAGACATCAAATACATCACATAACTATCAAGATGTGACCTGGGATCAAGTGATAGAATTTATCAACCTGATGACTTTTATTCTGGCAGTAAGATTTTACTCACCGTGTTAAGTGTCTTTTCTACAGCTATGTAAATGAAACAGATGTAAGGAAATCATAATATATCATATGTTTAAGATTTACAATACCATAAGCAGCCCTTAGATTTATCTGCTACAGGAGATCTTTGAAGCAGCTAGTGTAACAGCCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7581 lncRNA upstream 38312 22822871 ~ 22824066 (+) True G5619
TU7548 lncRNA upstream 154609 22707113 ~ 22707769 (+) True G5595
TU7339 lncRNA upstream 337632 22521606 ~ 22524746 (+) False LOC103043812
TU7342 lncRNA upstream 365476 22481707 ~ 22496902 (+) True LOC103043812
TU7587 lncRNA downstream 35716 22902766 ~ 22918073 (+) True G5620
TU7592 lncRNA downstream 35716 22902766 ~ 22917835 (+) False G5620
TU7604 lncRNA downstream 38088 22905138 ~ 22905655 (+) True G5628
TU7622 lncRNA downstream 82777 22949827 ~ 22951675 (+) True G5640
TU7629 lncRNA downstream 89010 22956060 ~ 22958499 (+) True G5642
XM_007248605.2 mRNA upstream 23951 22835801 ~ 22838427 (+) True LOC103047689
XM_022669867.1 mRNA upstream 32300 22812700 ~ 22830078 (+) True LOC103047173
XM_007248602.3 mRNA upstream 49762 22785074 ~ 22812616 (+) True c2cd3
XM_022669857.1 mRNA upstream 49762 22785074 ~ 22812616 (+) False c2cd3
XM_007248674.2 mRNA upstream 78729 22782092 ~ 22783649 (+) True tas2r4
XM_007248607.3 mRNA downstream 13787 22880837 ~ 22893099 (+) True LOC103022249
XM_022669901.1 mRNA downstream 29264 22896314 ~ 22903817 (+) True LOC103042381
XM_022669898.1 mRNA downstream 37725 22904775 ~ 22909631 (+) True LOC103042688
XM_022669894.1 mRNA downstream 43901 22910951 ~ 22917840 (+) True LOC103043000
XM_022669887.1 mRNA downstream 43975 22911025 ~ 22925516 (+) False LOC103021948
XR_002649977.1 other upstream 104165 22708912 ~ 22758213 (+) False LOC103045948
XR_002649972.1 other upstream 188394 22642610 ~ 22673984 (+) False LOC103041654
XR_002649973.1 other upstream 197542 22642610 ~ 22664836 (+) False LOC103041654
trnag-ucc_6 other upstream 270888 22591419 ~ 22591490 (+) True trnag-ucc_6
trnag-ucc_5 other upstream 271806 22590501 ~ 22590572 (+) True trnag-ucc_5
TU7588 other downstream 43973 22911023 ~ 22923081 (+) False G5620
TU7589 other downstream 43973 22911023 ~ 22923081 (+) False G5620
TU7634 other downstream 97010 22964060 ~ 22964924 (+) True G5646
TU7839 other downstream 445462 23312512 ~ 23351306 (+) False G5797
TU7837 other downstream 477446 23344496 ~ 23351046 (+) True G5797

Expression Profile