RNA id: XM_022671405.1


Basic Information

Item Value
RNA id XM_022671405.1
length 759
RNA type mRNA
GC content 0.58
exon number 1
gene id LOC111192961
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 19841219 ~ 19841977 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGAGAATCAGCGCCTCCAAGTCCGAGGCCATGGTCCTGAGCCGGAAAAGGGTAGAATGCCTTCTCCGGGTTGGGGAGGAGGTCCTGCCTCAAGTGGAGGAGTTTAAGTATCTTGGGGTCTTGTTCACGAATGAGGGAAAGATGGAGCGGGAGATCGACAGACGGATCGGTGCTGCGTCAGCAGTCATGCGGGCGCTGTACGGGTCCGTCGTGGTGAAGAGAGAGCTGAGCCAAAAAGCAAAGCTCTCGGTTTACCAGTCGATCTACGTTCCTACCCTCATCTATGGTCATGAGCTTTGGGTCATGACCGAAAGAACGAGATCACGGATACAAGCGGCCGAAATGAGTTTCCTTCGCAGGGTGTCTGGGCTCTCCCTTAGAGATAGGGTGAGGAGCTCAGTCATCCGGGAGGGACTCAGAGTAGAGCCGCTGCTTCTCCACATCGAGAGGAGCCAGTTGAGGTGGCTTGGGCATCTGATTAGGATGCCTCCTGACGCCTCCCTGGTGAGGTGTTTCGGGCACGTCCCACCGGGAGGAGGCCCAGGGGAAGACCCAGGACACGCTGGAGGGACTATGTCTCTCGGTTGGCCTGGGAACGCCTTGGAATTCCCCCGGACGAGCTGGCCCAAGTGGCTGGGGAGAGGGAAGTCTGGGTTTCCCTGCTTAGGCTGCTGCCCCCGCGACCCGACCCTGGATAAGCggaggaaaatggatggatggatgggtattCTAAAAACAGCATGCTGGGGCGACGAATGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0019843 rRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6562 lncRNA upstream 55591 19785354 ~ 19785628 (+) True G4902
TU6548 lncRNA upstream 105579 19733521 ~ 19735640 (+) True G4892
TU6500 lncRNA upstream 192386 19639376 ~ 19648833 (+) True G4853
TU6449 lncRNA upstream 562203 19278771 ~ 19279016 (+) True G4809
TU6389 lncRNA upstream 689172 19104769 ~ 19152047 (+) True G4761
TU6589 lncRNA downstream 354866 20196843 ~ 20197053 (+) True G4919
TU6600 lncRNA downstream 459885 20301862 ~ 20302429 (+) True G4930
TU6602 lncRNA downstream 462712 20304689 ~ 20304925 (+) True G4932
XR_002650152.1 lncRNA downstream 537267 20379244 ~ 20380295 (+) True LOC111192871
TU6610 lncRNA downstream 542787 20384764 ~ 20385255 (+) True G4940
XM_007231017.3 mRNA upstream 739901 19068463 ~ 19101318 (+) True LOC103030891
XM_007231018.3 mRNA upstream 739901 19068467 ~ 19101318 (+) False LOC103030891
XM_022669322.1 mRNA upstream 911399 18905646 ~ 18929820 (+) True LOC103038796
XM_022669310.1 mRNA upstream 970400 18666879 ~ 18870819 (+) True fat3
XM_007233954.3 mRNA upstream 1342088 18487006 ~ 18499131 (+) True LOC103035466
XM_007247674.3 mRNA downstream 679237 20521214 ~ 20536207 (+) True psmd2
XM_015605437.2 mRNA downstream 695743 20537720 ~ 20545404 (+) True LOC107197593
XM_007247670.2 mRNA downstream 703563 20545540 ~ 20548431 (+) True LOC103036360
XM_022669425.1 mRNA downstream 713482 20555459 ~ 20557658 (+) True LOC111192413
XM_022669416.1 mRNA downstream 716546 20558523 ~ 20578656 (+) False LOC103037169
TU6404 other upstream 675588 19160731 ~ 19165631 (+) True G4775
TU6209 other upstream 1081361 18759375 ~ 18759858 (+) True G4612
TU6210 other upstream 1081361 18759375 ~ 18759858 (+) False G4612
TU6211 other upstream 1081361 18759375 ~ 18759858 (+) False G4612
trnag-ucc other upstream 1437443 18403705 ~ 18403776 (+) True trnag-ucc
TU6659 other downstream 707240 20549217 ~ 20551609 (+) False LOC107197594
TU6745 other downstream 1141730 20983707 ~ 20999200 (+) True G5026
trnag-ucc_4 other downstream 2747483 22589460 ~ 22589531 (+) True trnag-ucc_4
trnag-ucc_5 other downstream 2748524 22590501 ~ 22590572 (+) True trnag-ucc_5
trnag-ucc_6 other downstream 2749442 22591419 ~ 22591490 (+) True trnag-ucc_6

Expression Profile