RNA id: XM_022671472.1


Basic Information

Item Value
RNA id XM_022671472.1
length 1776
RNA type mRNA
GC content 0.51
exon number 14
gene id farsb
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 24253928 ~ 24261667 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGACCTGGATACCATCTCCGGACCATGTGTCTTTGTgcgttcgtgtgtgtgtgtctgttcagACGGCTGGTGTGAGACCCCACGCTGTGGCTGCAGTGTTGCGAAACATCACCTTCACACAGAATCGTTATGAGAGCTTCATCGAGCTGCAGGAGAAACTCCATCAGAACGTCTGcagGAAAAGGACACTGGTTGCTATAGGAACTCATGACCTGGATACCATCTCCGGACCGTTCACCTTCACGGCTAAAGCTCCCGACGACATTCGCTTCACCCCCCTGAACCAGAGCCAGGAGTACACCGCCACCCAGCTCATGAGCCTCTACAAGacaGACAGTCACCTGAGGCATTACCTGCACATCATTGAGGATGAGCCTCTCTACCCCATCATCTACGACAGCAACGGCATAGTCCTGTCCATGCCCCCCATCATCAATGGGGATCACTCCAAAATATCTGTGAACACGAAGAACGTCTTTATCGAGTGTACGGCCACAGATCTCACCAAGgcCAAAATCGTACTGGACATGATTGTGACTATGTTCAGTGAATACTGTGCCGAGCCATTCACGGTTGAGGAGGCTGAAGTGGTTTATCCGGATGGCAGGATGGTCACTTATCCAGAGCTGGCCTACAGGACTGAAACCCTTTCAGCAGATTATATCAACCGCAGAGTAGGAATCAGtGAATCAGCTGATAGCGTTGCTCAGTTGTTGACGAGGATGTGTCTGAAGTCGGAGGTTGTTGGTGATGATGGTCAGATCCTGGTGGAGATCCCGCCCACTCGCTCTGATGTTATCCACGCCTGTGACATCATGGAGGATGCTGCTATGGCATATGGCTTTAATAACATCACTATGACAACACCACGCACATACACTATAGCCAATCAGctCCCTTTAAATAAGCTCACGGAGTTGTTGAGGATGGATCTCGCAGCAGCTGGATTTACTGAAGCGCTTACCTTTGCTCTGTGTTCCCAGGAAGATATAGCAGATAAACTGGGAAAGAAGATCACAGAGACCAGAGCTGTACACATCTCCAACCccaaaacagcagaattccagGTGGCGAGGACCACTCTGCTTCCAGGGCTACTAAAGACTCTGGCTGCTAACAGGAAGATGCCCCTCCCCCTCAAACTGTTTGAGATCTCCGATGTAGTTCTGAAGGACGAAACCACCGATGTTGGAGCTCGGAATAACAGGCGTCTGTGTGCGGTTTACTACAATAAGAGTCCGGGCTTCGAGGTGACCCACGGCCTGCTGGACCGGGTCATGCAGCTGCTGGAGGTCCGACCGGGCCGTAAACGCGGATACTACATTCAGGCCGCCGAGGacTCCTCCTTCTTCCCGGGACGCTGTGCGGAGATCTATGCTCATGAGAAGGTTGTGGGACGTCTCGGCGTTCTTCACCCTGACGTTATTAACGGCTTCGAGCTCACCATGCCCTGCTCCGCCCTCGACATTGATCTCGAGCACTTCCTGTGACCTCACAGCTGACACCCTCTGCACTAGCCACGCCCATTAACACTTCTCACTGCATCTATTGGCTGCTGTTTACATCTACTGTCCTCATTCGCGCATGGAAGGAGTGGGCGGAGTCTCCTTTTACTGTCAGGTTCAGGTGGCGTTCTGTGGAGATATGGTTGTTACGCagatattagttttatttaagataAATATTTCATCATTCATAAACAGTTGGTGAATGCCCGTACTCCATATAACTGcatattacagtaaataaagacaGATCAAGACTGAattctgaaa

Function

GO:

id name namespace
GO:0006432 phenylalanyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004826 phenylalanine-tRNA ligase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01890 FARSB, pheT; phenylalanyl-tRNA synthetase beta chain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650063.1 lncRNA upstream 16 24253155 ~ 24253912 (+) True LOC111192653
TU8218 lncRNA upstream 128566 24114947 ~ 24125362 (+) True G6051
TU8215 lncRNA upstream 144931 24107964 ~ 24108997 (+) True G6049
TU8006 lncRNA upstream 163446 24088651 ~ 24090482 (+) True G5898
TU8028 lncRNA upstream 172567 24080638 ~ 24081361 (+) True G5913
TU8265 lncRNA downstream 9883 24271550 ~ 24276459 (+) True LOC111192656
XR_002650065.1 lncRNA downstream 12825 24274492 ~ 24279468 (+) False LOC111192656
TU8259 lncRNA downstream 14900 24276567 ~ 24279467 (+) False LOC111192656
TU8404 lncRNA downstream 122768 24384435 ~ 24384926 (+) True G6167
TU8405 lncRNA downstream 123436 24385103 ~ 24394430 (+) True G6168
XM_022670424.1 mRNA upstream 5433 24235851 ~ 24248495 (+) True usp16
XM_022670412.1 mRNA upstream 37076 24181559 ~ 24216852 (+) True LOC103021580
XM_022670416.1 mRNA upstream 37076 24181559 ~ 24216852 (+) False LOC103021580
XM_022670407.1 mRNA upstream 74284 24177344 ~ 24179644 (+) True LOC103042333
XM_007237911.3 mRNA upstream 78111 24173386 ~ 24175817 (+) True LOC103043067
XM_007237925.3 mRNA downstream 21655 24283322 ~ 24287126 (+) True LOC103047234
XM_022670464.1 mRNA downstream 30261 24291928 ~ 24296350 (+) True LOC111192659
XM_022670469.1 mRNA downstream 49375 24311042 ~ 24326538 (+) True LOC103022207
XM_007237922.3 mRNA downstream 67353 24329020 ~ 24340961 (+) True LOC103046413
XM_007237923.3 mRNA downstream 67998 24329665 ~ 24340961 (+) False LOC103046413
TU7890 other upstream 346454 23878152 ~ 23907474 (+) True LOC103022942
TU7964 other upstream 420098 23832236 ~ 23833830 (+) True G5871
TU7839 other upstream 902622 23312512 ~ 23351306 (+) False G5797
TU7837 other upstream 902882 23344496 ~ 23351046 (+) True G5797
TU7634 other upstream 1289004 22964060 ~ 22964924 (+) True G5646
XR_002650083.1 other downstream 1150527 25412194 ~ 25428351 (+) False LOC103027586
TU8949 other downstream 1778489 26040156 ~ 26046246 (+) True G6576
TU8950 other downstream 1778489 26040156 ~ 26046246 (+) False G6576
TU8951 other downstream 1781392 26043059 ~ 26046246 (+) False G6576
XR_002650136.1 other downstream 2657624 26919291 ~ 26931495 (+) False LOC103042574

Expression Profile