RNA id: XM_022681094.1


Basic Information

Item Value
RNA id XM_022681094.1
length 2463
RNA type mRNA
GC content 0.55
exon number 9
gene id LOC103045140
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 9408099 ~ 9463585 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGAGAGGAGCGAGTGGAGACCGGAGAGCGGAGCGCGCGGGGGAAGGGGAGCGGGGCTGGATCACCCGGGCTCGGTTTAGATGCGGATTACCGCTGTTTCTAGTGGCTCCACCGAGAGATGAGAGCTACCCGGAGCCACGGAAGAGTCTGAAGAGGAGTATTCTCAGCCTCGGGTACTTCTGTCAACAAGAAATGGAATACTGCTTCCTGGCCTTCGCTTAATTCTAGTGCAGGTACATGCCTCTGCACTGAAGCAAAGCAGAGACGGAGTTCTGCTCTAGAATCTGTTCTGAAGGACTCAGGCGCCCAGGTCTGTTCATAAGcacaatgtaaatgtaaagaagTCCTTGAGGAAATATATCATTACAGCTTACATCACCCACCCACTTTTGTGGGTTAGCGCAATGCTAGCATGACACCGTAGGACCCCCGGCCCTTGTGTCCGGCCCGTCCGTTGCCATTGGAACAAGAGGCAAAGATGGCAAAGCCCTTCTACAGACTTCAGCGCTTCTTGCGGCGGACTCAGCTGCTGTTCATGTTCCTCGGCGTGGCCTACATCATGGCGGGAAGCGTGCTCTTGCTGCAGAGGTCTGGACTGGTGATATCTCAGCGTGGAAGTAGCAGCAGTTTCCTCATACCACCCTCGCTGCCTTCACCGCCCAGGGCTCTGGAGCCTCCTGCCATCAGGGCCAGGTATGGGATGATGGGTCCTCGGTTGAGCATAAAAGGACATCAAGGGAGCCAGCCGGAGGACTGGTCTGGACCACAGTGGCTGATGTCCCGCAACCAAGAGATCAGGCACCTGCGGCGGCGATGGTTCCATAGCCTTATGTCTGAGCAGGACACGACCAGAGCTGAGAGGGTCAGTCTGAAGAGGAAAGTCAGACACAAAGGGACGTACATCGGCTGTTTTCTGGACGATGCTAAGGACCGGTCGCTGAAGGGCATGGTGTTCTACGACTTCCGCAAAATGACCAGCACCCTGTGTCAGGACACCTGCACTGAAAGtgggTACCAGTTCGCTGGGCTGGAGTATGGGTCCGAATGTTACTGTGGCAACCGCATCACCAGTGCTCGGATGAAGGAGGAAGAGTGTAATTTGGACTGCAAGGGAGAAAAGGGCTCTATCTGTGGAGGCGTGGCCCGCCTGTCCGTCTACAAGGTGGAAGAGGTTCTTCCAGGCCAGAGGAGATACAGGAACGTCCGTTATCGTGGCTGCTTCAAGAGACCAgacaacaccacagcagccgCCCTGGTCCACATGGTCCAGCCCAACCTCACGTCTCAGAGCTGCATCGAGGCCTGCATGGACAAGGAGTTTCCTTTAGCCATGCTGAGCAGACCAGACTGCTTCTGTGGCTATTCCACTCCACACTTCTCCCTCCACGAGCCGGTGGATGAAGAACACTGCGCCCTGGTTAACAGCAGCCTGCCAACCTCAAAACCCAGTTCATATTTCCTCCAGGTCTACCAGACGCCCGTGCAGGacTCGAGATGCACAGAGAGGAAGTTCCTGCCTGAGAAGTCGAGTTGGCTGGTGGCTCTGTCTAGTTTCCCTGGAGCTGGGAACACCTGGGTGAGGCACCTGATTGAGCTAGCGACCGGATTTTACACAGGCAGCTACTACTTCGATGGAACCCTTTATAACAGAGGCTTCAAGGGCGAGAAAGATTACTGGAAAAGTGGACGGACCATCTGTGTGAAGACGCACGAGAGCAGCAAGAGGGACATAGAGATGTATGACTCAGCCATCTTGCTCATCAGGAACCCCTACCGCTCCCTCATGGCCGAGTTTAACCGCAAGTGTGCCGGCCACCTTGGCTACGCCTCTGACCAGCACTGGAAGAGCAAAGAGTGGCCGGAGTTCGTGGGCAGTTACGCGTCCTGGTGGGCGTCTCACGTGCTGGACTGGCTCCGCTTCGGCCGGAGGCTGCTGGTAGTTCATTACGAGGAGCTGCAGGAGTCGCTGGTACCCAGGCTGCGCTCCATCACCACCTTCCTCAACGCCACCGCCAGCGAGGAGCGCCTCCTGTGCGCCGAAAACAACAAGGATGGACACTTCAAGCGCTCCGGCTCCCATCGACCCTCTTTTGATCCCTTCACCCCAGACATGAGGAGGCTGATTGATGGTTATATCGGCGCTGTGGACCAGGCTCTTAGAGCCAGCAACCATACAGGCCTCCCTCAGGAATACCTCCCGAGATGATGAGGGTTCTGGATATAGACTGGACATAGAACTACagtacacatatacatacatacacacactgaaccTGGCCCTCCAGGTCGAGGGGATCAGGTATTGCTGCCAAGATCTCAACAATGTCCCATTCAAGAAttcaggagttggacaatgaaactgaaacaccattTTAGTATGGGAGGTTTcttggctaaattggagcagcctggtggccaattttcattaattgcacattattgcaccagtaagagcagagtgtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3265 lncRNA upstream 9099 9398594 ~ 9399000 (+) True G2464
TU3255 lncRNA upstream 13511 9386268 ~ 9394588 (+) True LOC111195023
XR_002651425.1 lncRNA upstream 13519 9393970 ~ 9394580 (+) False LOC111195023
TU3247 lncRNA upstream 91965 9315684 ~ 9316134 (+) True G2453
TU3237 lncRNA upstream 233343 9174336 ~ 9174756 (+) True G2443
TU3268 lncRNA downstream 511 9464096 ~ 9465472 (+) True G2466
TU3283 lncRNA downstream 21975 9485560 ~ 9489942 (+) True G2481
TU3286 lncRNA downstream 27035 9490620 ~ 9491298 (+) True G2484
TU3287 lncRNA downstream 27795 9491380 ~ 9491632 (+) True G2485
TU3294 lncRNA downstream 42125 9505710 ~ 9505977 (+) True G2491
XM_007237177.3 mRNA upstream 251859 9154389 ~ 9156240 (+) True LOC103038411
XM_007237174.2 mRNA upstream 460863 8944461 ~ 8947236 (+) False lyrm9
XM_022671346.1 mRNA upstream 467689 8939639 ~ 8940410 (+) True LOC111192952
XM_022671338.1 mRNA upstream 553898 8846840 ~ 8854201 (+) True LOC103022607
XM_007258003.3 mRNA upstream 568720 8837372 ~ 8839379 (+) True LOC103022922
XM_007229233.3 mRNA downstream 108935 9572520 ~ 9600832 (+) True LOC103038783
XM_022681181.1 mRNA downstream 108935 9572520 ~ 9600262 (+) False LOC103038783
XM_015604160.2 mRNA downstream 170508 9634093 ~ 9743491 (+) True LOC103039705
XM_007229235.3 mRNA downstream 170509 9634094 ~ 9743491 (+) False LOC103039705
XM_022681592.1 mRNA downstream 170510 9634095 ~ 9743491 (+) False LOC103039705
TU3170 other upstream 450707 8944479 ~ 8957392 (+) True lyrm9
TU3168 other upstream 460783 8944479 ~ 8947316 (+) False lyrm9
TU3112 other upstream 673147 8732723 ~ 8734952 (+) True G2358
TU3040 other upstream 847621 8560066 ~ 8560478 (+) True G2304
XR_002651195.1 other upstream 2240299 7162246 ~ 7167800 (+) True LOC111194639
TU3313 other downstream 168280 9631865 ~ 9670125 (+) True G2509
XR_001518524.2 other downstream 170509 9634094 ~ 9742465 (+) False LOC103039705
TU3788 other downstream 1810413 11273998 ~ 11279159 (+) False LOC103029949
TU3793 other downstream 1824546 11288131 ~ 11288846 (+) True G2910
TU4041 other downstream 2460865 11924450 ~ 11927250 (+) True G3096

Expression Profile