RNA id: XR_002649857.1


Basic Information

Item Value
RNA id XR_002649857.1
length 361
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id LOC111192356
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 16349607 ~ 16350551 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atcgcgtacttccatactaaacagtatgcaaaagcagtatGCGAGATCGGGTAGTGTGTCCGAATGCGCAGTAGGCGAGTTTGGGTACGCGAAAAGTTCCCGGATGACGTACTGCACCGGgagacatttttaagtatacaaGCCCAGCACACTTCACCCGCTAatatttcccacaatccaccGGGAGCCGCGCTGAGCTGAGTGACCCGTCAGTGAGCGGCGGAGCGGCGGaggagaggagtggagagagagagaagtttatGAGattcaaCTATCCTTCCTACTCGAGAGGATGAAGAtggagagggagaaaaatgaacaatgaataaaaaaaataaataaagctactttaaagacttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5647 lncRNA upstream 34670 16314112 ~ 16314937 (+) True G4167
TU5643 lncRNA upstream 36938 16311941 ~ 16312669 (+) True G4164
TU5634 lncRNA upstream 38962 16293511 ~ 16310645 (+) True G4158
TU5635 lncRNA upstream 38962 16295248 ~ 16310645 (+) False G4158
TU5583 lncRNA upstream 192074 16156512 ~ 16157533 (+) True G4120
XR_002649856.1 lncRNA downstream 5731 16356282 ~ 16366689 (+) True LOC111192355
TU5658 lncRNA downstream 6124 16356675 ~ 16365017 (+) False LOC111192355
TU5707 lncRNA downstream 129784 16480335 ~ 16480652 (+) True G4214
TU5801 lncRNA downstream 328854 16679405 ~ 16681219 (+) True G4277
TU5862 lncRNA downstream 794370 17144921 ~ 17145205 (+) True G4331
XM_007245984.3 mRNA upstream 57487 16280969 ~ 16292120 (+) True LOC103022964
XM_007245980.3 mRNA upstream 72774 16271162 ~ 16276833 (+) True LOC103022345
XM_007245988.3 mRNA upstream 138102 16205897 ~ 16211505 (+) True dll3
XM_007245989.2 mRNA upstream 157039 16159758 ~ 16192568 (+) True timm50
XM_007245975.3 mRNA downstream 104133 16454684 ~ 16477105 (+) True LOC103047564
XM_007245974.3 mRNA downstream 131645 16482196 ~ 16530242 (+) False exoc3l2
XM_007245973.3 mRNA downstream 140508 16491059 ~ 16530242 (+) True exoc3l2
XM_015604961.2 mRNA downstream 180798 16531349 ~ 16536523 (+) True LOC103030966
XM_022668852.1 mRNA downstream 182539 16533090 ~ 16536523 (+) False LOC103030966
XR_002649582.1 other upstream 1187333 15072840 ~ 15162274 (+) False LOC103023550
trnae-uuc_1 other upstream 1303223 15046313 ~ 15046384 (+) True trnae-uuc_1
TU5080 other upstream 1310693 15038555 ~ 15038914 (+) True G3790
TU4998 other upstream 1386024 14961173 ~ 14963583 (+) True G3736
TU4335 other upstream 3365338 12982625 ~ 12984269 (+) True G3313
TU5723 other downstream 192391 16542942 ~ 16545854 (+) True G4221
TU5717 other downstream 268495 16619046 ~ 16623069 (+) False G4219
TU5719 other downstream 268495 16619046 ~ 16622740 (+) True G4219
TU6119 other downstream 1721413 18071964 ~ 18073663 (+) True G4550
trnaw-cca other downstream 2050503 18401054 ~ 18401125 (+) True trnaw-cca

Expression Profile