RNA id: XR_002649869.1


Basic Information

Item Value
RNA id XR_002649869.1
length 2481
lncRNA type inter_gene
GC content 0.36
exon number 5
gene id LOC111192366
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 17890228 ~ 17943162 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caagaTAATTGGTTATTTTTCCTGTCAGTCAGAATCTTGAGTAGTGGGTGGGTGGGGCTTGGAGCTGCGTCGCGAGCAGCAGGGGGCAGAacgagagaaggagagaagaagagagagctAAGTAGAGTCAGTCATGAAGCACAGGTGCTACAAAACAAGTCCAAAATGTGGCTAACGGCCAGTTAAACCAGTGGTGTGCCTTTTTTGGGGCATCTTTGATGAGGACACGGACAGTGTTTCTGAAGAGCCCAGTGAGCTGCATAGAGCTTGAGAGCTGATGAGGGAGCTGTTTATGACTTCTTGGCTTCTTGGCTGTTCCACCATTCCTAAACTACTACTGCGCTGATTCTACGTTGTCCTGCTCTTACCAGACACCCAGAACATTCTCTAGAGGTCATGCTGTTGGAGGCTTTACCGTAGAGAGCCATTAGCAGAGGTAAACCGCAGCATCCATAGATAAAGGCATTACCATCCCATCCCTAAGGAGTGAACAAATAGATACAACTGGAGGGAACAAGATACCACACATGCACAGCGGAGGAAAAGAATGGCCAAACATGGgagTCTTTCCACTGACAGCGTGtaaaaactacctccaccatgtttgaaagctGTAACTTAGCCTGGCCAACTCTCACTGCGACAAACGACTGAAAGGAAAATTACATCTACTTTGAAAGTGTAAAAGAAACACCCACATACTGTTGTTCCTTTGTCACAGTGAGTAAAATTTGCCTATaactataaattaattatatgaGCTTGCTGGCTACACAAAGAACATTTTTAACCAACTTTTACCTTtccaaataattgaataattttttttttttttaattttgcagaAATTCCAACATGCAAGGACCAGCAGAAATGGTCCAACAGTGGAAAATACATCATTTCACATTAAtttctcttgtaaagttgccattttaaAGATACTAGATTTTCTTTTCCAAGCGCAACAATTGAATCATTACATTAAATGCAATTCTCTGTGATTgacagaaatgaaaagaaaaaaagataaatgaaaTCTAATTTCGAACCTCATTTCCTAACTTAAAACAACCCAACGGTATTGCAAGAAACAAAGTGTCAGACCACAGCAGGCCTTCACAAACATCTGTACAAATATATtcataaacaacaaataaacagaaataacttAAATTCACAACAGACATAAATGCAACAACAGATCCTTCTAATGACTCCTGGTGATGCCTGGTTTAGAAAACATAGTAAAGAAACAGAACTGAACCGatagaaaaatgtttaaaaaatctttaGATCTAAAGATCGCAAAAATTATtgaaaacaataatatatatatcgcaatatctGCGTTTTATGTTTTCTCCCACCCCTACTACAGTCACTACTACATTAATGTGataacactttctgtaaatgtcATGTCTATTGGGCTATATAAACAGACTcataacacattttaatgcattcataaggcattataaacatggctataaatatttctaaaaatatatgatatgaCAGCTATGttcattatgaattgtgatttATCATCATGAGCTGTTCTTATGTAATACATGTTTAACATCTGGGTTGAATTATCATACTGTATATCTgtcactatatatactatatatatttctatgatTGACTCCTATGaacacattatattataatgtataattaatgAGTGGTTTAAAGTAACTAAAGCATGTTTTATTAAGGCAGCTTTGTTTAGGTTCTTGGTATTAACATAACATCTTATAACACAGCTGATGATGCATTAttatcacaattcataatgcatgaTAAACATGAgtataatttgttatatttttaaatatttatgatcatgtttataatgctttatgaatgcattataatgtgttatgtgtTATAGTATGTTTTTAGAGTCTAATAGACacaacattcatagaaagtgttactttTAATCTCTTTTTGTATTCAAAGGCATGAAGACAATGAATAACGGGACGTGTGCTCGATTAGCATCTGAAGGTAGCACCATGATGGAGGAGGCTCGCTAATCATTAGCATGTGTTGTTTTCCCAGTAAAATGGATTCTTTAAAGGAGAACGCTACTGTATAATGGAGCTTGCACACCTGATATATATGCCATAccatgtctgtctttgttaaagagcataacACAAAGTATTTCAGTATGAAAACACGTATTTGTAATGTATGACAGCATCCTGTATCATCAAACAGTGTGAAAATCGGTTAAAATTGGGTAGCTGATGaggacaggatgtagtaaagttctttagaccgctcactaaactgcagtgtgaaaccgaaactaaccggattaaatactgtatttacaatgtaacaaacacacaaagctTGGTGCGAACTCTGGTCCGggctttcaggtgtgaaaatgcctgCACTGTGTTTTGACACAGGGTGTAAATGCACACGCACAGCTGGTCTAGTCCATATAGAAGAGAAGTa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5992 lncRNA upstream 38785 17847764 ~ 17851443 (+) True G4451
TU5961 lncRNA upstream 376428 17449394 ~ 17513800 (+) True G4420
TU5947 lncRNA upstream 522977 17366847 ~ 17367251 (+) True G4406
TU5942 lncRNA upstream 542218 17347662 ~ 17348010 (+) True G4401
TU5877 lncRNA upstream 700982 17189032 ~ 17189246 (+) True G4346
TU6015 lncRNA downstream 15350 17958512 ~ 17985189 (+) False G4467
TU6014 lncRNA downstream 40715 17983877 ~ 17985189 (+) True G4467
TU6069 lncRNA downstream 67133 18010295 ~ 18011849 (+) False LOC103039709
TU6085 lncRNA downstream 91349 18034511 ~ 18038744 (+) True G4531
TU6092 lncRNA downstream 98127 18041289 ~ 18422356 (+) False LOC103034503
XM_022669057.1 mRNA upstream 16412 17454350 ~ 17873816 (+) False lsamp
XM_022669050.1 mRNA upstream 16412 17454352 ~ 17873816 (+) True lsamp
XM_022671138.1 mRNA upstream 1198469 16689234 ~ 16691759 (+) True LOC111192859
XM_007245963.3 mRNA upstream 1246408 16633323 ~ 16643820 (+) True LOC103044410
XM_022671146.1 mRNA downstream 67016 18010178 ~ 18012103 (+) True LOC103039709
XM_022669104.1 mRNA downstream 74597 18017759 ~ 18022389 (+) True LOC111192370
XM_007233939.3 mRNA downstream 181532 18124694 ~ 18131953 (+) True LOC103030597
XM_022669160.1 mRNA downstream 194862 18138024 ~ 18166677 (+) False sidt2
XM_022669153.1 mRNA downstream 194863 18138025 ~ 18166677 (+) True sidt2
TU5717 other upstream 1267159 16619046 ~ 16623069 (+) False G4219
TU5719 other upstream 1267488 16619046 ~ 16622740 (+) True G4219
TU5723 other upstream 1344374 16542942 ~ 16545854 (+) True G4221
XR_002649582.1 other upstream 2727954 15072840 ~ 15162274 (+) False LOC103023550
trnae-uuc_1 other upstream 2843844 15046313 ~ 15046384 (+) True trnae-uuc_1
TU6119 other downstream 128802 18071964 ~ 18073663 (+) True G4550
trnaw-cca other downstream 457892 18401054 ~ 18401125 (+) True trnaw-cca
trnag-ucc other downstream 460543 18403705 ~ 18403776 (+) True trnag-ucc
TU6209 other downstream 816213 18759375 ~ 18759858 (+) True G4612
TU6210 other downstream 816213 18759375 ~ 18759858 (+) False G4612

Expression Profile