RNA id: XR_002652336.1


Basic Information

Item Value
RNA id XR_002652336.1
length 617
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC111197033
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 12989585 ~ 12992123 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATTGTAACTACCGTTAGCTAACTGGCTGTTTCAGCTCTCGGTGAAACGCGATCTTATTACTGAACTACAGCGTGGTttaaaagctgctgctgattgagaaaaacacacccTGTGCTGGGAGAGAAGGTCGTGAATCAGCTCTTAAACGgcgctgggtgtttgttttgtttctgaacaAGCAGGTGACTCTGCAACTGGATTTTATAAAGATATGAGAAAAGAATGCTTTCGTCGTGGATTTAACATGAAAAGGTACTTCTAAGGCAGCTAGTTGAAGGCGTGATTGAGGTCCATGCCAGAGGGGTTCTGCACTGTGACCTCAAGACATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTTAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4240 lncRNA upstream 268745 12714618 ~ 12720840 (+) True G3232
TU4203 lncRNA upstream 331278 12577080 ~ 12658307 (+) True G3205
TU4166 lncRNA upstream 736973 12246977 ~ 12252612 (+) True G3179
TU4082 lncRNA upstream 880549 12106391 ~ 12109036 (+) True G3129
XR_002652018.1 lncRNA upstream 1031120 11958075 ~ 11958465 (+) True LOC111196183
TU4352 lncRNA downstream 6922 12999045 ~ 12999446 (+) True G3323
TU4378 lncRNA downstream 83474 13075597 ~ 13162587 (+) True G3342
TU4377 lncRNA downstream 160897 13153020 ~ 13205546 (+) False G3342
TU4436 lncRNA downstream 470972 13463095 ~ 13464950 (+) True G3377
XR_002648489.1 lncRNA downstream 475550 13467673 ~ 13492977 (+) True LOC111188402
XM_007234508.3 mRNA upstream 196282 12788901 ~ 12793303 (+) True trappc4
XM_007234505.3 mRNA upstream 235685 12708209 ~ 12753900 (+) True sacs
XM_007234506.3 mRNA upstream 235685 12708209 ~ 12753900 (+) False sacs
XM_007234504.2 mRNA upstream 320816 12641165 ~ 12668769 (+) True mipep
XM_007234499.3 mRNA upstream 351326 12623464 ~ 12638259 (+) True LOC103047626
XM_007260901.3 mRNA downstream 11414 13003537 ~ 13028805 (+) True LOC103023132
XM_022686557.1 mRNA downstream 22482 13014605 ~ 13028805 (+) False LOC103023132
XM_022686605.1 mRNA downstream 22539 13014662 ~ 13028805 (+) False LOC103023132
XM_007260902.3 mRNA downstream 42357 13034480 ~ 13042611 (+) True LOC103023447
XM_007260900.3 mRNA downstream 132659 13124782 ~ 13150184 (+) True LOC103022831
TU4335 other upstream 5316 12982625 ~ 12984269 (+) True G3313
TU4041 other upstream 1062335 11924450 ~ 11927250 (+) True G3096
TU3793 other upstream 1700739 11288131 ~ 11288846 (+) True G2910
TU3788 other upstream 1710426 11273998 ~ 11279159 (+) False LOC103029949
XR_001518524.2 other upstream 3247120 9634094 ~ 9742465 (+) False LOC103039705
TU4998 other downstream 1969050 14961173 ~ 14963583 (+) True G3736
TU5080 other downstream 2046432 15038555 ~ 15038914 (+) True G3790
trnae-uuc_1 other downstream 2054190 15046313 ~ 15046384 (+) True trnae-uuc_1
XR_002649582.1 other downstream 2080717 15072840 ~ 15162274 (+) False LOC103023550
TU5723 other downstream 3550819 16542942 ~ 16545854 (+) True G4221

Expression Profile