RNA id: TU129266


Basic Information

Item Value
RNA id TU129266
length 678
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G95953
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 252893 ~ 256290 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tattgtgcATCATGTTGAAAACTCAAAATATGCATTTATATCTTAAAATCAACTTTTttcaatctaaaataaaaatttcatTTTATCTTTCACTGGAGGTTGTATTTATATTGCCATATATTATATTCttagtcatttttaaacatttattttgggcCATTCATTATGCAATGTGCAATGCGAAGAAAAACAGCCAGATTCAAATTATGTCTGCAATGAATAAACACTAAATGTAGGTGAAAATTCTGCCACGAAACATAATCTTAGTGTTTTTAAGGTTCTAACATTTCTAAACCTGGGAACAAACCTTCAGTGCACTGAATAACATATTTAGAGAATTCAGATGGTAACATAAAACAGCTGGCAGTGGGAAATGGTGTGTCCTCAGGGGTACTGGGGTACATTGGCTTGGACATCTGGAATGGCATCTTGCTGTGGCTTTAAACCCTTGAACAGCTTGTCTGTGCAGTCCTTTTCATGTTTGTTGGCAGAATTGTTGGACCATCACTGCCAGTGGTATAGCATAGAacccatgttttactgttgagGCcttttttattgttatccTCATTGAGAAGTTCAAAGCCATCATAATCCATTGTTGTAAATTCTGTCACGCCTGTCAACATACAAAtggcaataaaagaaaataacatattatataaaattcaaTGTGtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129263 lncRNA upstream 19696 231507 ~ 233197 (+) True G95950
TU129261 lncRNA upstream 25968 225423 ~ 226925 (+) True G95948
TU129255 lncRNA upstream 99259 152501 ~ 153634 (+) True G95943
XR_002650508.1 lncRNA upstream 101462 146111 ~ 151431 (+) True LOC103043678
TU129248 lncRNA upstream 121516 130793 ~ 131377 (+) True G95940
TU129275 lncRNA downstream 13823 270113 ~ 353531 (+) True G95961
TU129277 lncRNA downstream 18216 274506 ~ 275501 (+) True G95962
TU129262 lncRNA downstream 42677 298967 ~ 303210 (+) True G95949
TU129343 lncRNA downstream 153352 409642 ~ 420012 (+) False LOC103044902
XR_002650506.1 lncRNA downstream 153445 409735 ~ 420176 (+) True LOC103044902
XM_022674060.1 mRNA upstream 28098 163671 ~ 224795 (+) True cep162
XM_007232958.3 mRNA downstream 193461 449751 ~ 460182 (+) True LOC103039326
XM_007232955.3 mRNA downstream 224869 481159 ~ 495383 (+) True LOC103038500
XM_022674061.1 mRNA downstream 340696 596986 ~ 636430 (+) True crhr1
XM_007232950.3 mRNA downstream 351625 607915 ~ 636430 (+) False crhr1
XM_007232946.3 mRNA downstream 396334 652624 ~ 682305 (+) True LOC103035972
TU129495 other downstream 542946 799236 ~ 808574 (+) True LOC103040575
XR_002650511.1 other downstream 687583 943873 ~ 948585 (+) True LOC111193408
XR_002650519.1 other downstream 3608700 3864990 ~ 3882676 (+) False LOC111193421
TU131003 other downstream 4709410 4965700 ~ 4975504 (+) False ndufaf6
TU131004 other downstream 4709410 4965700 ~ 4975504 (+) False ndufaf6

Expression Profile