RNA id: TU129277


Basic Information

Item Value
RNA id TU129277
length 283
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id G95962
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 274506 ~ 275501 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttagttagctaggttaaatgtgtgttagttagctaggttaaatgtgtgttagttaggtaggttaaatgtgtgttagttagctaggttaaatgtgtgttagttaggtaggttatatgtgtgttagttagctaggttaaatgtgtgttagttagctaggttaaatgtgtgttagttagctaggttaaatgtgtgttagttagctaggttaaatgtgtgttagttagctaggttaaatgtgtgttagttagctaggttaaatgtgtgttagttagctaggttaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129266 lncRNA upstream 18216 252893 ~ 256290 (+) True G95953
TU129263 lncRNA upstream 41309 231507 ~ 233197 (+) True G95950
TU129261 lncRNA upstream 47581 225423 ~ 226925 (+) True G95948
TU129255 lncRNA upstream 120872 152501 ~ 153634 (+) True G95943
XR_002650508.1 lncRNA upstream 123075 146111 ~ 151431 (+) True LOC103043678
TU129262 lncRNA downstream 23466 298967 ~ 303210 (+) True G95949
TU129343 lncRNA downstream 134141 409642 ~ 420012 (+) False LOC103044902
XR_002650506.1 lncRNA downstream 134234 409735 ~ 420176 (+) True LOC103044902
TU129344 lncRNA downstream 138198 413699 ~ 420012 (+) False LOC103044902
TU129339 lncRNA downstream 168912 444413 ~ 454841 (+) True G96008
XM_022674060.1 mRNA upstream 49711 163671 ~ 224795 (+) True cep162
XM_007232958.3 mRNA downstream 174250 449751 ~ 460182 (+) True LOC103039326
XM_007232955.3 mRNA downstream 205658 481159 ~ 495383 (+) True LOC103038500
XM_022674061.1 mRNA downstream 321485 596986 ~ 636430 (+) True crhr1
XM_007232950.3 mRNA downstream 332414 607915 ~ 636430 (+) False crhr1
XM_007232946.3 mRNA downstream 377123 652624 ~ 682305 (+) True LOC103035972
TU129495 other downstream 523735 799236 ~ 808574 (+) True LOC103040575
XR_002650511.1 other downstream 668372 943873 ~ 948585 (+) True LOC111193408
XR_002650519.1 other downstream 3589489 3864990 ~ 3882676 (+) False LOC111193421
TU131003 other downstream 4690199 4965700 ~ 4975504 (+) False ndufaf6
TU131004 other downstream 4690199 4965700 ~ 4975504 (+) False ndufaf6

Expression Profile