RNA id: TU129490


Basic Information

Item Value
RNA id TU129490
length 1154
lncRNA type inter_gene
GC content 0.49
exon number 10
gene id G96116
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 736741 ~ 743739 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCATGCCAgcacttttatttaataaaaacaaaattaccataacttaaaatctgaaataaaaccaaaataaagtCATTTTCTTTCGATTGGGATGTAAGAAGTCACTGTTCAGCATCTTGCTAAACGTCTGCAACGATTCCAGTGTCGCCACGAAGATGCTGGTCCTGCAGCACTGAGGGCCGAGAGGTCAGTGGTCGTGGGGTCAATGGGGTTTCTGGCCGGCCAGGCTCTGCTTCATATGAAATGTTGTGCTGGGTGAGCAGAGAGCGCAGCCGCTCAATTTCAGCATGCTGTTTGTCAAAGTCCTGTGTGCACTGCTCCAGGCTTTGGTGtcgtggagtgtgtgtgttttcttcttGTGTCTGTGCCTGAACTTTCTTCAGAAAGCCAGCTTCTTCAAACAGGTCCTTCAGCATCTTTTTGTAGCCCTGTTCAGTTATGAGTTCATCATACCGGGCCTGCTCAATCTCATCCCACTCCTTCTGCAGTTTTTCACTCAGCACAGGGTACACCAGGAGGGAATGTTTGTGACAGACTAGTGGCGTCTCAAACGTGAACGAGTACACACATGTCTGTGGTTCCGACACTCTTGCCAGTTTACTGCTGTTCCCACAAGTAAAGAggacttgGTCTGTCTGTTCTTGTTCCCACAGGAGTCTCCCTCTCTCATCCACATCACAGAGAACGTGTTGTTGTGGATCTCCCACTCATGCCAGATGcCCAAAATTCCACTGTAAGCGTTCCACCTGAAGCTCTGCTCATGCTGTGTCACGTTATGGAATGGACAGAACTCATACTTATACGTGGACTCGATGTAGCTGAAACATTTCCCGGCCAGTCTGGCCAGATGAGGAGGTCCAGACACTGGAGATGGTTTGACCCTGGCCTGCAGCCGGCTGCCCTGAGCCAGAAGGTGGCTGTTCAACCCGAATGTATTTGGTTCCTCTACAATCTTCATCTTCCCACCAGACACAAGCGACACCAGTAACGTCAGCCATGGCAGATATCGAGAAGCAAATATGCACGACATGACCTCAAAACTCTAAAATCTGCTGCAGAAATGAGCAAAAACGTTATACTGTTTCCTTGTGTTTATCCGAGACCGTCGCCATGATGCCGCCCCTGATCACATGACTCTGCAGAAGGACTCGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129424 lncRNA upstream 150629 585905 ~ 586112 (+) True G96073
TU129412 lncRNA upstream 157910 578494 ~ 578831 (+) True G96061
XR_002650510.1 lncRNA upstream 203672 531857 ~ 533069 (+) True LOC111193406
TU129360 lncRNA upstream 205776 530684 ~ 530965 (+) True G96021
TU129359 lncRNA upstream 208993 527430 ~ 527748 (+) True G96020
TU129500 lncRNA downstream 65582 809321 ~ 809530 (+) True G96124
TU129515 lncRNA downstream 91743 835482 ~ 836102 (+) True G96132
TU129703 lncRNA downstream 597822 1341561 ~ 1391532 (+) True G96281
TU129704 lncRNA downstream 600298 1344037 ~ 1344448 (+) True G96282
TU129710 lncRNA downstream 621045 1364784 ~ 1456887 (+) True G96286
XM_007232943.3 mRNA upstream 5306 715242 ~ 731435 (+) True LOC103035039
XM_022674062.1 mRNA upstream 38007 685850 ~ 698734 (+) False LOC103035662
XM_007232945.2 mRNA upstream 38007 686979 ~ 698734 (+) True LOC103035662
XM_007232946.3 mRNA upstream 54436 652624 ~ 682305 (+) True LOC103035972
XM_022674061.1 mRNA upstream 100311 596986 ~ 636430 (+) True crhr1
XM_007232940.3 mRNA downstream 646 744385 ~ 750365 (+) True tsr3
XM_022674063.1 mRNA downstream 9346 753085 ~ 776488 (+) False LOC103033547
XM_022674064.1 mRNA downstream 9680 753419 ~ 776488 (+) True LOC103033547
XM_022674065.1 mRNA downstream 34090 777829 ~ 795543 (+) True LOC111193407
XM_022674066.1 mRNA downstream 34106 777845 ~ 795543 (+) False LOC111193407
TU129495 other downstream 55497 799236 ~ 808574 (+) True LOC103040575
XR_002650511.1 other downstream 200134 943873 ~ 948585 (+) True LOC111193408
XR_002650519.1 other downstream 3121251 3864990 ~ 3882676 (+) False LOC111193421
TU131003 other downstream 4221961 4965700 ~ 4975504 (+) False ndufaf6
TU131004 other downstream 4221961 4965700 ~ 4975504 (+) False ndufaf6

Expression Profile