RNA id: TU129500


Basic Information

Item Value
RNA id TU129500
length 210
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G96124
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 809321 ~ 809530 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGTGATGTCAGGATATTTTTATAGGATATTAAACTCTAAAATTTGTCACGTGGCTTTTCACCAAAATTGCTGAGGCAAAGCCAGGATCCTAACCCACTTAAGCTCTGAAACCTTGGTAAAACATAAGAGCTTGAATGTCTTGGGATGACCAAACCTTTGTTgggttgtcttttttttttttactctaaaatCATACAAAACTATTAGAc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129490 lncRNA upstream 65582 736741 ~ 743739 (+) True G96116
TU129424 lncRNA upstream 223209 585905 ~ 586112 (+) True G96073
TU129412 lncRNA upstream 230490 578494 ~ 578831 (+) True G96061
XR_002650510.1 lncRNA upstream 276252 531857 ~ 533069 (+) True LOC111193406
TU129360 lncRNA upstream 278356 530684 ~ 530965 (+) True G96021
TU129515 lncRNA downstream 25952 835482 ~ 836102 (+) True G96132
TU129703 lncRNA downstream 532031 1341561 ~ 1391532 (+) True G96281
TU129704 lncRNA downstream 534507 1344037 ~ 1344448 (+) True G96282
TU129710 lncRNA downstream 555254 1364784 ~ 1456887 (+) True G96286
TU129694 lncRNA downstream 572895 1382425 ~ 1421881 (+) True G96273
XM_022674067.1 mRNA upstream 773 799224 ~ 808548 (+) False LOC103040575
XM_022674068.1 mRNA upstream 773 799738 ~ 808548 (+) False LOC103040575
XM_022674065.1 mRNA upstream 13778 777829 ~ 795543 (+) True LOC111193407
XM_022674066.1 mRNA upstream 13778 777845 ~ 795543 (+) False LOC111193407
XM_022674063.1 mRNA upstream 32833 753085 ~ 776488 (+) False LOC103033547
XM_022674069.1 mRNA downstream 31338 840868 ~ 864588 (+) True cog7
XM_022674033.1 mRNA downstream 210604 1020134 ~ 1209397 (+) True nlrc3
XM_007256809.3 mRNA downstream 414646 1224176 ~ 1271502 (+) True wdr90
XM_022674080.1 mRNA downstream 468254 1277784 ~ 1302779 (+) False rhot2
XM_022674079.1 mRNA downstream 468255 1277785 ~ 1302779 (+) True rhot2
TU129495 other upstream 747 799236 ~ 808574 (+) True LOC103040575
XR_002650511.1 other downstream 134343 943873 ~ 948585 (+) True LOC111193408
XR_002650519.1 other downstream 3055460 3864990 ~ 3882676 (+) False LOC111193421
TU131003 other downstream 4156170 4965700 ~ 4975504 (+) False ndufaf6
TU131004 other downstream 4156170 4965700 ~ 4975504 (+) False ndufaf6
TU131005 other downstream 4156170 4965700 ~ 4967968 (+) False ndufaf6

Expression Profile