RNA id: TU129560



Basic Information


Item Value
RNA id TU129560
length 3909
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G96171
representative True

Chromosome Information


Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 637382 ~ 723478 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


tgatttcagtgtttcatgattttcttttagTTATGTATAAAATACAGAAGCGCACTACAGTAAGACCAAACAGAGAAAGATTAAAGCCCTGCTGTACACAAGCCTGGAAAGAAAAAGCAAGTGGGAAGAAGCAGAGAAGGCGAACAAAACATCATACGCTAACAGCTTTCTTTGTCATTGCTGTGCAGTTTAGCATCAAGAATACAGGACAGTACTGGCCCAAAGAAGGAGCGGATGGACTGATAAGTGCAGAAATGAGGTATAAAGTGAAAGGATGTGACCAGGCTCTGTCTAAATGATTGCCTTAGATCTGCACTATGAATGCGCTCGCTATTTCTGATTCTGGCTTTAgtaacagaataaaaacatgacGGTAATAATCACAGtaccaacaacaacagcaatcaGGACTCAATGCATACAGTGGTCATTACGTCAATGTGTACAGGCCATGAAAGGAGgtaatgaaatatataaattacaaGTAAACTCAGTGCTGAAcaacttattttctttacatAATTAGGTCCATAAGCATGGATACGAGCTGCTGCTTCAGGAATAAATGTACACATGAAGGAaatagaacagcactgctgttcAAACTATGGCAGTTGTAACAATACCTCTGGTAAAGAATCTAGAATAACAAAAAGAGCAGTACGCATACTTGTATAAATAGTAATAATCATAaccataataacaataataataattaataatcaagtAAAACCCCCTCATTATCATGTCTGTGTAATTGTCTGTGTGAAGTTTGAGCTAAAAATGCGCTGCAGCACTAAACATTCAAGCTCGCCTTGGATTCCTCACCTTTATCTGGCTAATCTCTTAATCATGCTTACAATTTTTTAGTCCAGCTGTTCGCACGTTACACTAATGTTGCAATGGGAACCCTACATTATCTCCAATGCAACTTCATCTCCGAGGCAGTAAAACTATATCACCATGCCGTCACTGAGATGCCGTCTGCAGCCCTCAAGACTGCACAGGCATATTCTCTTCAGGCATGATCCTCTGTCCTCGGTTCAATATTAAAATGGTACTCAAGTAGGTTGTAATGCGCACATTAATTGCTATACGCCATGTACTAAACACTTCTAAATactatgtaatttttttttgtttgttacctTCATTTAAGTTTGCTTCACTGTGAATGAGTAAACTGTTGAGCAGCTTACACAGAGCAGCTATCTTCCTATGGTAAATATCAGTAACGTTTtttagagaaaagaaaaaaaataataatatctttaaATATCTTCATTCAGGTAAAATACATCAAGACCAAAAACCCATGACTGGTTCATTAAAGGTCCATCATACAGTttcccactgtttttttttttataagaagaagaagcaagTCTGAATTTCTACTCTATGTGAGACTAATCACTGCAGTTCAGTACTGAAGCCACTGCCAGTTCAGAGATTCACTTCTGCCCCGCATTAATGTCTCTCATGACCGGCCACACCacgcaacaaacacacacttcagaCAGAATATGAGACCACAATATGTTTCTACATTCTGTGTCTGCATTAATTTTTAGACCCACTGATCATATAGCAGTATTTTCCAGttgtataattacagactgtagtcctgtatctgttccCCTTGTTAGAACCccactgagaatagtccacacTCAAAATATCAAGTCAACTGCATTGAGCATTGTGGAAATCGGCCTATGAGCTGCTTCATGTGGGCattgatgaaggactagagtaTAACAAACATGAACAGTGCAGCAACAAATGAGCTTCTGGCTCTAAAACATATACACATCTACATGGTGGACCCGCTAGTCTAATAAGAGTGGACAGTAAAGGGAACACAgcgtttaaaacctccagcagctctGCTGCACAGCGCACACCATGTCAGAGAATGATTCACCATCCAaataacagctgctctgtggtggtcctctGGGGTCCTGACCTCTGAAGAACAGGGTCAAAGGAGAATAATAACCGATGCAGAGAACCAGAACTACAGGACTGTTGTCTGTAATTAAAGATCTAGGACGTGCTTCTATATGATCAATAGAGCTGATAAAATGATCAATGTGTGTAGAAacaaataccgtatttttcgcaatataaggcgcacttaaaatccttaaaatcataagtgcgccttatgtatgaattttaccagtcaggttgtaaggagcagtaaagccactctgctgaagtacagagttatataggagtttcagtttagttctccagcagtattagcttaACCAATAACTCAGGGTTCCTAAGTGTAGAGCTGTTGGACGGCATTAACCGCTAGCTGTTAGCcgctaatactaatgctccagctttagtggaaatctggaaataaatggaagtgctttactaacccaaataaacagttttcaggagagaaatttgtgtagattaacatccagcactcatttgacttgtctgactcatttgattattattatttttttataaagaattacagttttgataacttagcttagctttacctactaaattagaaggaaaacatggtgacacccctgtttcaTACTAGTAtcgcataaaatgcgccttataatctggtgcgccttatactgcgaaaaatatggtaagacatcataatattctgactggactgtGCGTGTTACTTTTGCACATGGCTCAATATCACTGGAACACAAAGTAATAATCCCATCCTAAAAATCAGTCCAAGGTCAGTCCCATGACATATCTACTATATTACTGTAAGTATTACTATATTTTCTACTTGCTATGAAGTATTTTCCCCTTAAAGCAAGTGTGAGGCAGCTTCATTCTGTGCAGCTCTTTTTGTTAGTGACCATTTCATTGAGTCAAGTGAAGTAGAATAGACATGGGACGTCATAAAAAGTTCAGACTTTAGAGTTCGGACCGCTTAATGGAGTGAAAGAAAAGCTTCATAAATGTAAAGCatgtaaaaacattaacataCAGCAGCAATATGGAACAGCTAGATGCTGCACGTTGCACATTGCTCCTATAAACCTAATCCATGACAGAACGCACCAAATGTAGATTCTAAACTGAAACCCTTAAGTCTTATCTTTGTCTAGATCTAAACCAAGGGATCTTAAAGATGCAGGGAGAGGATAAAGAAGTGGTCGTTAACGTCTCTGTGTAATCAATCAGTCGCCTCTTGCTGTTTTTAAAGTGACTTTTAAAGTGAGCTCAAGAGTGGTACCAAGAGTGGTAACTCCTTACATTCATTAAAATGCTATATGAAGGAGGTGCGCAATGACAGCTTGGGGGTGAGAGGGACGGATGAAAGATCAGATCACACCAAACCAGATTGCGGCACCAAAAGCTACTGTGAACACTGCACGCAAGAGATTCATTCTACTTGTTTATACCGACCCCCTGCACTTTTAAGGCATTATGACAGGAACAGACACCTCTTCTTAATTCTTTGCTACAGTTCCTCGCTGCCTGGCGATTTCATCTTTCTTACCTTTAAACGCTTAAGAATAATCTCACTTTCAGTGGTTCTATCCTGCCTCTGGTCCcttggcacacacacacacacacataccacacacacacatacataccacacacacgaaaaacaaaccaaacaatctCTAAAATCTACTCAAATTTCTTGTCAGTGCCTTGCATGATGCCAAAACCCTGAAACATGAAACAATACCTAACCAAAAGTGTCCAAAACACCCTAATCCTTCCCTAATCCACTAGTGCCCTCCTCCTACACGTCCTACAGCTCTTTCTTGTTCTGGGTTTTTGAACTGTGGTTCTGCTCGCTTCCCGCTGCATCACTTTGGTTGATGGTCATGAGCTGCAAAAGATCGTGCAAGGCCTTTCTGATCTGTGTCCCAAACTTATGAG

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU129438 lncRNA downstream 101795 578492 ~ 579159 (-) True G96081
TU129405 lncRNA downstream 153193 527434 ~ 527761 (-) True G96058
TU129404 lncRNA downstream 154193 526407 ~ 526761 (-) True G96057
TU129403 lncRNA downstream 154671 525949 ~ 526283 (-) True G96056
TU129398 lncRNA downstream 189959 490376 ~ 490995 (-) True G96051
TU129600 lncRNA upstream 68115 753008 ~ 760508 (-) True G96204
TU129602 lncRNA upstream 70991 755884 ~ 808525 (-) False G96205
TU129596 lncRNA upstream 85193 770086 ~ 776473 (-) True G96202
TU129601 lncRNA upstream 114281 799174 ~ 808525 (-) True G96205
TU129622 lncRNA upstream 150635 835528 ~ 836117 (-) True G96213
XM_022674052.1 mRNA downstream 104398 575511 ~ 576556 (-) True LOC111193396
XM_007232952.3 mRNA downstream 107664 551438 ~ 573290 (-) True LOC103037419
XM_007232953.3 mRNA downstream 135935 536446 ~ 545019 (-) True dcakd
XM_007232954.3 mRNA downstream 136189 536446 ~ 544765 (-) False dcakd
XM_007237272.3 mRNA downstream 304524 366617 ~ 376430 (-) True LOC103040905
XM_007232944.3 mRNA upstream 13830 698723 ~ 711111 (-) True dnaaf3
XM_007232941.3 mRNA upstream 51843 736736 ~ 743730 (-) True gnptg
XM_007232937.3 mRNA upstream 127215 812108 ~ 827863 (-) True il4r
XM_007232935.2 mRNA upstream 194001 878894 ~ 969646 (-) False LOC103030489
XM_022674073.1 mRNA upstream 194001 878894 ~ 969646 (-) False LOC103030489
XR_002650509.1 other downstream 248561 431659 ~ 432393 (-) True LOC111193405
XR_002650507.1 other downstream 249288 431162 ~ 431666 (-) True LOC111193404
TU129322 other downstream 415370 252924 ~ 265584 (-) False LOC103043490
TU129943 other upstream 1126945 1811838 ~ 1814918 (-) False LOC103031019
XR_002650512.1 other upstream 1585610 2270503 ~ 2271577 (-) True LOC111193410
XR_001518422.2 other upstream 3465110 4150003 ~ 4174207 (-) False LOC107197182
trnas-aga_10 other upstream 4407993 5092886 ~ 5092967 (-) True trnas-aga_10
TU131662 other upstream 4893669 5578562 ~ 5586666 (-) True G97717

Expression Profile


TU129560 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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TU129560 Expression in each Bioproject

Bar chart with 7 bars.
TU129560 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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