RNA id: TU129596



Basic Information


Item Value
RNA id TU129596
length 1859
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id G96202
representative True

Chromosome Information


Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 770086 ~ 776473 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


ACCCCTACATGCTTTATTTCAATTCTAGGTGTCATCAAGCTCTTGAGCCTGAGAGGGAAAATACACACAGCGCCAAACACAAAGCCAGACCCCACTCACGCATGCCCGTTCACACCAACTGCttgcacgcgcacacacacacacacacacacacacacaccacacacacacaaaagcacacTGTCGCtttcatacactcacacacgctCAAGCGCTGGTGGGGTCTGCCAATGCACAGGCTTTAAATTATCAGAATATGAGTCAATCACTGCGCAAATAGAAAATGTATATGAtatagtaagaaaaaaaagctgtaaaatatCATAGTTTACAATAATTCTTCACATTCAAAGGCTTTACATTTCAAAACATACACAGCAAGGCCCTCGAACATGACTTCAATCCAAATATGATTTTCATATATTAGAATTTAAATAACACAGAAGTAGCCGGGCCCGAACCGAGTAGCCCAATAACCTTATAcaagaataaaaatacaaaacccAGATCCAAGAGTCACCTCGCTCTACTCACCCTCCAAGTTCAATATTACATCAACTATACATCACAGTCATCAGTTACCAACCAGGAAGAGGAGACACACGCTCGCACGCACGCAAACCACACATCCATGTGCCCAGCTCCCTCCTGTTAAAAACGGCCAAGTGAGAAGGAAGCGCACGAAAACACGCACACACCAATCTTTCTctgccatccacacacacatgcacacgcacacacacgcacacgtcTCCACTCAGAAACATACGCACACTCATTATCCCATTGCAGACGTttcgaaaagaaaaaaaaaaagaactgaaaaatCAGTCGCGCAATTGGCTCAGGGCCTGGGGTGATGCATTTACCTCTAGAACTACATTACCCATAGTTCTGCAGTGATTGTTGTGGTGTGGTGATGATTGGGATGGAGTTTCTTTcctgtaatgtatttttgttcaaGGAGTTTTGATTCGGAACATAAACGACTTGAGGAGCAGGACCTCCCACCACAGAAATTCAACACCACATCCTCCAATCAGAATCAGCTAGACCAGCTACTGCGGCCAATGAGGGCAAAGGACCCGCCTTAACTCTAAACGCAGACCAATCAAACAGAGGGGACACACCCCTTACACTGAGATCCAGGGCTTGAAAAAAAAGGGGATGGGGCGGGGTGAGGGAGGGAAGGAAGGAGAGAGCGAGAATGAGAGCGCATAAGATAAAGAGAATGCTGACTGTACAAGGGGTGTGTATGTTCTGTGATTGGTCAAAGGGCTGCTGGGGATGTGGCCGTAGAGGAGAGCTCCTATAAGCTGGGGCTCTGATGCTTGTGGTAGATCGTCCTCCACACTTCTTGGATCTTCTTACACCATTTGTCAGCGTTGCCACTTGGGTCCATCAGATAGTAGGTCCGGTTCGGCGTGTGGACAAAGAACGTTTTAAAGTTTTTGGCTTCAGGCCGAAGTTCTGGTGACCAGGGGATTTCTCCCTTCAGAACCTTATTCACCGGATCCACGTAGTAGAGATGAGGGCCTTCGGTCAGGAGCAGCTGCCTGCGCCGTGCAAACAGACCTTTACGCTTGTCAACGGGGCCCATCTTAAAGATGAGGTTATTCTCAACAAACTGGTGCCATGGGTTTGCAGCGCTTTGTTTGTCCAGCAGGAGACGCTTTTCCTCTTCACTGAATTGCAGGTCCAGCTCCATGCTGTTACTGTCTAGCTCATGAATATGGATGAACTGATCCACGCTTGGGGCAGGGTTACATACAGGAAGAAGACTCTCAGAAGGCTCATCAGCTGAGGGCGTGGGGCCAGGCTGAGCCACTTGCATGCTGCTGAACTGGCTTAAAAGGTCA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU129600 lncRNA downstream 9578 753008 ~ 760508 (-) True G96204
TU129562 lncRNA downstream 46608 637382 ~ 723478 (-) False G96171
TU129560 lncRNA downstream 85193 680954 ~ 684893 (-) True G96171
TU129438 lncRNA downstream 190927 578492 ~ 579159 (-) True G96081
TU129405 lncRNA downstream 242325 527434 ~ 527761 (-) True G96058
TU129601 lncRNA upstream 22701 799174 ~ 808525 (-) True G96205
TU129622 lncRNA upstream 59055 835528 ~ 836117 (-) True G96213
TU129673 lncRNA upstream 447691 1224164 ~ 1226850 (-) True G96257
TU129783 lncRNA upstream 501270 1277743 ~ 1281993 (-) True G96355
TU129790 lncRNA upstream 511570 1288043 ~ 1291525 (-) True G96358
XM_007232941.3 mRNA downstream 26356 736736 ~ 743730 (-) True gnptg
XM_007232944.3 mRNA downstream 58975 698723 ~ 711111 (-) True dnaaf3
XM_022674052.1 mRNA downstream 193530 575511 ~ 576556 (-) True LOC111193396
XM_007232952.3 mRNA downstream 196796 551438 ~ 573290 (-) True LOC103037419
XM_007232954.3 mRNA downstream 225321 536446 ~ 544765 (-) False dcakd
XM_007232937.3 mRNA upstream 35635 812108 ~ 827863 (-) True il4r
XM_007232935.2 mRNA upstream 102421 878894 ~ 969646 (-) False LOC103030489
XM_022674073.1 mRNA upstream 102421 878894 ~ 969646 (-) False LOC103030489
XM_022674074.1 mRNA upstream 102421 878894 ~ 969646 (-) False LOC103030489
XM_007232932.2 mRNA upstream 102421 878894 ~ 969646 (-) False LOC103030489
XR_002650509.1 other downstream 337693 431659 ~ 432393 (-) True LOC111193405
XR_002650507.1 other downstream 338420 431162 ~ 431666 (-) True LOC111193404
TU129322 other downstream 504502 252924 ~ 265584 (-) False LOC103043490
TU129943 other upstream 1035365 1811838 ~ 1814918 (-) False LOC103031019
XR_002650512.1 other upstream 1494030 2270503 ~ 2271577 (-) True LOC111193410
XR_001518422.2 other upstream 3373530 4150003 ~ 4174207 (-) False LOC107197182
trnas-aga_10 other upstream 4316413 5092886 ~ 5092967 (-) True trnas-aga_10
TU131662 other upstream 4802089 5578562 ~ 5586666 (-) True G97717

Expression Profile


TU129596 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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TU129596 Expression in each Bioproject

Bar chart with 7 bars.
TU129596 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.

Homologous


species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU143753 True 335 lncRNA 0.49 1 CI01000026 754829 ~ 755163 (+)
grasscarp (Ctenopharyngodon idella) TU542287 True 2202 lncRNA 0.47 6 CI01000329 221561 ~ 225420 (+)
bowfin (Amia calva) TU143753 True 2167 lncRNA 0.44 3 CM030135.1 3908019 ~ 3910399 (-)