RNA id: TU129673



Basic Information


Item Value
RNA id TU129673
length 572
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G96257
representative True

Chromosome Information


Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 1224164 ~ 1226850 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


ACTGGGGCTGGGTCTGAACAGCAGGTAGAGGTAACGGCCTGTGAGACCCAGTGATTGGCTGCTGGTTCTGGGCAGGAGAATATAGTTGCTGGCTGGAATGGAACCGCGAATACGGAACACCGAACACTTCAGAGTCTTGTCCATGTAGGTTGTAACATCGCCTTCTTTGCTGGCCTTCCTCCATTCCTCCAATTTTAGGTGCTTAAAGACATTAACATAAGGATGTTGCCATGCTTTTGAGGACATTGTAAACAGACCGAGATTAGCAGATTGTAGATGGGTTGATATCAGCAGGCTAAAAGAACAGACGCTAGCGCTGAGTTAGCTCTAACTTTCACAGTtagcatatataaataaatatatctatttGTTTGTTGATGTGCTCCGTTCCAGGCCAGcgtcacattttaaactaaagtCCTTCATGTCTCAGAAAGCTTCATATCCTTCGCAGaagtttgtttgtgttgttaAAGTGGTtaaagtgctctctctctctctgcgctcCGGCTGCTCATGTTTTGTTGTCAGACTCAGGTCTCCTCCCGCTGCAGCAGCCGCCGCTTTCAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU129622 lncRNA downstream 388047 835528 ~ 836117 (-) True G96213
TU129602 lncRNA downstream 415639 755884 ~ 808525 (-) False G96205
TU129601 lncRNA downstream 415639 799174 ~ 808525 (-) True G96205
TU129596 lncRNA downstream 447691 770086 ~ 776473 (-) True G96202
TU129600 lncRNA downstream 463656 753008 ~ 760508 (-) True G96204
TU129783 lncRNA upstream 50893 1277743 ~ 1281993 (-) True G96355
TU129790 lncRNA upstream 61193 1288043 ~ 1291525 (-) True G96358
TU129850 lncRNA upstream 207405 1434255 ~ 1486728 (-) False G96407
TU129849 lncRNA upstream 223663 1450513 ~ 1486445 (-) False G96407
TU129816 lncRNA upstream 228120 1454970 ~ 1456856 (-) True G96383
XM_022674077.1 mRNA downstream 1099 1209508 ~ 1223065 (-) False cluap1
XM_022674078.1 mRNA downstream 1100 1209508 ~ 1223064 (-) False cluap1
XM_022674075.1 mRNA downstream 1100 1209508 ~ 1223064 (-) True cluap1
XM_022674076.1 mRNA downstream 1375 1209508 ~ 1222789 (-) False cluap1
XM_007232935.2 mRNA downstream 254518 878894 ~ 969646 (-) False LOC103030489
XM_007256812.3 mRNA upstream 82693 1309543 ~ 1311140 (-) True LOC103026561
XM_007256816.3 mRNA upstream 195929 1422779 ~ 1439828 (-) True LOC103027648
XM_022674087.1 mRNA upstream 231600 1458450 ~ 1477019 (-) True anks3
XM_022674086.1 mRNA upstream 231600 1458450 ~ 1474151 (-) False anks3
XM_022674085.1 mRNA upstream 231600 1458450 ~ 1474151 (-) False anks3
XR_002650509.1 other downstream 791771 431659 ~ 432393 (-) True LOC111193405
XR_002650507.1 other downstream 792498 431162 ~ 431666 (-) True LOC111193404
TU129322 other downstream 958580 252924 ~ 265584 (-) False LOC103043490
TU129943 other upstream 584988 1811838 ~ 1814918 (-) False LOC103031019
XR_002650512.1 other upstream 1043653 2270503 ~ 2271577 (-) True LOC111193410
XR_001518422.2 other upstream 2923153 4150003 ~ 4174207 (-) False LOC107197182
trnas-aga_10 other upstream 3866036 5092886 ~ 5092967 (-) True trnas-aga_10
TU131662 other upstream 4351712 5578562 ~ 5586666 (-) True G97717

Expression Profile


TU129673 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.
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TU129673 Expression in each Bioproject

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TU129673 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
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