RNA id: TU129713


Basic Information

Item Value
RNA id TU129713
length 300
lncRNA type intronic
GC content 0.42
exon number 2
gene id G96289
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 1392008 ~ 1392358 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACAAGCAAAGAAGAGCCAggctgaagtttgcaaaagatcaTAAGAATTGGACTATATAGGACTGGAGTAAGATCATTTTCTCAGATAAGTCCAATTTTTAGCTTTGCTCAACACCTGGCCATCAAATGTTTAGATGGAGACCTGCAGAAGTGTCTTGCACCCACTGTGAAATTTGGTGGAAAATCagtgatgatctggggatgTTTCGGCAAGGCTGGAATTATCCTGGACCAACACTTGCTTCCTTCTGCTCTGACAATATTCTCTGAGAACTGTTTCTTCCAGCAAAACAATGCTCA

Function

GO:

id name namespace
GO:0005102 signaling receptor binding molecular_function
GO:0005515 protein binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function
GO:0098772 molecular function regulator molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129703 lncRNA upstream 476 1341561 ~ 1391532 (+) True G96281
TU129704 lncRNA upstream 47560 1344037 ~ 1344448 (+) True G96282
TU129515 lncRNA upstream 555906 835482 ~ 836102 (+) True G96132
TU129500 lncRNA upstream 582478 809321 ~ 809530 (+) True G96124
TU129490 lncRNA upstream 648269 736741 ~ 743739 (+) True G96116
TU129715 lncRNA downstream 33900 1426258 ~ 1429217 (+) True G96291
TU129926 lncRNA downstream 418031 1810389 ~ 1857895 (+) True G96460
TU130001 lncRNA downstream 605513 1997871 ~ 2003611 (+) True G96517
TU130005 lncRNA downstream 619033 2011391 ~ 2014287 (+) True G96520
TU130040 lncRNA downstream 683028 2075386 ~ 2075954 (+) True G96541
XM_022674080.1 mRNA upstream 89229 1277784 ~ 1302779 (+) False rhot2
XM_022674079.1 mRNA upstream 89229 1277785 ~ 1302779 (+) True rhot2
XM_022674081.1 mRNA upstream 89229 1277789 ~ 1302779 (+) False rhot2
XM_007256809.3 mRNA upstream 120506 1224176 ~ 1271502 (+) True wdr90
XM_022674033.1 mRNA upstream 182611 1020134 ~ 1209397 (+) True nlrc3
XM_007256815.3 mRNA downstream 47471 1439829 ~ 1455488 (+) False wdr24
XM_022674083.1 mRNA downstream 47534 1439892 ~ 1455488 (+) True wdr24
XM_007256824.3 mRNA downstream 90328 1482686 ~ 1486444 (+) True LOC103029750
XM_022674089.1 mRNA downstream 105753 1498111 ~ 1515737 (+) True c11h7orf50
XM_007256830.3 mRNA downstream 495243 1887601 ~ 1905908 (+) True colec10
XR_002650511.1 other upstream 443423 943873 ~ 948585 (+) True LOC111193408
TU129495 other upstream 583434 799236 ~ 808574 (+) True LOC103040575
XR_002650519.1 other downstream 2472632 3864990 ~ 3882676 (+) False LOC111193421
TU131003 other downstream 3573342 4965700 ~ 4975504 (+) False ndufaf6
TU131004 other downstream 3573342 4965700 ~ 4975504 (+) False ndufaf6
TU131005 other downstream 3573342 4965700 ~ 4967968 (+) False ndufaf6
TU131002 other downstream 3575746 4968104 ~ 4975504 (+) False ndufaf6

Expression Profile