RNA id: TU130040


Basic Information

Item Value
RNA id TU130040
length 544
lncRNA type intronic
GC content 0.36
exon number 2
gene id G96541
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 2075386 ~ 2075954 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATAAAGGTATCACATGTAGGTTAATGTTGGGTTTAGAAAAACCTAGAAACCTAGCCTGTTTTTGATAACAGCTAACTGTTAGTCTCAAGCCAATTAATATTTCTGAGAAATTCCAGCAAATTCCAGCAGTCAACAGTATGATCTCATACActagccacacacacactgacacacacacatacacctgaATTACAAACACAACACCAGCAGCATGACTGCTTTTTtactataaaagaaaaaagtgagtgtTAACTCACAGGATGTTACATAATACAGAGCTACATCATACATAATGATTTAATTGAGGAAAACAATCCTAGAGTGGAGCAGTCACACTCATACTCCCACCCACCACATCTGGTCTCCAAAAGGGcgaaatacaatacaataaaacacatgGTGTTGCTCAGGTGCGCATGGATGTTTTATCTGATATATGTGTCTGATATGAACAGGTATTCACACACATAAGTGTGTCACaaattgtaataattgtaataaacaaCAGTATTGTCTTCTTTTAAAACGGTTTTTATATTGATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130005 lncRNA upstream 61099 2011391 ~ 2014287 (+) True G96520
TU130001 lncRNA upstream 71775 1997871 ~ 2003611 (+) True G96517
TU129926 lncRNA upstream 217491 1810389 ~ 1857895 (+) True G96460
TU129715 lncRNA upstream 646169 1426258 ~ 1429217 (+) True G96291
TU129694 lncRNA upstream 653505 1382425 ~ 1421881 (+) True G96273
XR_002650513.1 lncRNA downstream 148628 2224582 ~ 2227412 (+) True LOC111193411
TU130097 lncRNA downstream 186085 2262039 ~ 2265095 (+) True G96582
TU130116 lncRNA downstream 377798 2453752 ~ 2454050 (+) True G96601
TU130119 lncRNA downstream 419415 2495369 ~ 2495929 (+) True G96604
TU130124 lncRNA downstream 425203 2501157 ~ 2503293 (+) True G96609
XM_007256842.3 mRNA upstream 120320 1950534 ~ 1955066 (+) True nov
XM_015607742.2 mRNA upstream 120320 1950534 ~ 1955066 (+) False nov
XM_022674097.1 mRNA upstream 151235 1911105 ~ 1924151 (+) True mal2
XM_007256830.3 mRNA upstream 169478 1887601 ~ 1905908 (+) True colec10
XM_022674089.1 mRNA upstream 559649 1498111 ~ 1515737 (+) True c11h7orf50
XM_007256835.3 mRNA downstream 34923 2110877 ~ 2121710 (+) True prpf3
XM_007256836.3 mRNA downstream 50329 2126283 ~ 2148738 (+) True ice1
XM_022674107.1 mRNA downstream 50329 2126283 ~ 2148738 (+) False ice1
XM_022674108.1 mRNA downstream 75963 2151917 ~ 2167691 (+) True LOC103036307
XM_022674109.1 mRNA downstream 166216 2242170 ~ 2495068 (+) True LOC103036916
XR_002650511.1 other upstream 1126801 943873 ~ 948585 (+) True LOC111193408
TU129495 other upstream 1266812 799236 ~ 808574 (+) True LOC103040575
XR_002650519.1 other downstream 1789036 3864990 ~ 3882676 (+) False LOC111193421
TU131003 other downstream 2889746 4965700 ~ 4975504 (+) False ndufaf6
TU131004 other downstream 2889746 4965700 ~ 4975504 (+) False ndufaf6
TU131005 other downstream 2889746 4965700 ~ 4967968 (+) False ndufaf6
TU131002 other downstream 2892150 4968104 ~ 4975504 (+) False ndufaf6

Expression Profile