RNA id: TU130124


Basic Information

Item Value
RNA id TU130124
length 250
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G96609
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 2501157 ~ 2503293 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTAGCTGTACGCTAACCCTAGTTCTCCCTtagtaactttagctagctcaccgctaatgttagctagctctctgcaaaccctagttctctccccagtaacgtagctaactcgccactaatgttagtatgtcagctagctctcagctaatgttaactcagctaaccttagttctctcccgttaacattagctagctctccgctaatgttagctagctctacgctaacctgtTTTCTCCCCAgcaacgttagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130119 lncRNA upstream 5228 2495369 ~ 2495929 (+) True G96604
TU130116 lncRNA upstream 47107 2453752 ~ 2454050 (+) True G96601
TU130097 lncRNA upstream 236062 2262039 ~ 2265095 (+) True G96582
XR_002650513.1 lncRNA upstream 273745 2224582 ~ 2227412 (+) True LOC111193411
TU130040 lncRNA upstream 425203 2075386 ~ 2075954 (+) True G96541
TU130129 lncRNA downstream 14879 2518172 ~ 2586270 (+) True G96614
TU130187 lncRNA downstream 418176 2921469 ~ 2922174 (+) True G96651
TU130212 lncRNA downstream 604488 3107781 ~ 3108131 (+) True G96663
TU130368 lncRNA downstream 619562 3122855 ~ 3123407 (+) True G96761
TU130439 lncRNA downstream 930078 3433371 ~ 3438696 (+) False ddc
XM_022674109.1 mRNA upstream 6089 2242170 ~ 2495068 (+) True LOC103036916
XM_022674108.1 mRNA upstream 333466 2151917 ~ 2167691 (+) True LOC103036307
XM_007256836.3 mRNA upstream 352419 2126283 ~ 2148738 (+) True ice1
XM_022674107.1 mRNA upstream 352419 2126283 ~ 2148738 (+) False ice1
XM_007256835.3 mRNA upstream 379447 2110877 ~ 2121710 (+) True prpf3
XM_022674035.1 mRNA downstream 232836 2736129 ~ 3006374 (+) True LOC103037869
XM_007232026.3 mRNA downstream 644076 3147369 ~ 3272603 (+) False cobl
XM_022674120.1 mRNA downstream 644076 3147369 ~ 3272603 (+) False cobl
XM_022674116.1 mRNA downstream 644076 3147369 ~ 3272603 (+) False cobl
XM_022674122.1 mRNA downstream 644076 3147369 ~ 3272603 (+) False cobl
XR_002650511.1 other upstream 1552572 943873 ~ 948585 (+) True LOC111193408
TU129495 other upstream 1692583 799236 ~ 808574 (+) True LOC103040575
XR_002650519.1 other downstream 1361697 3864990 ~ 3882676 (+) False LOC111193421
TU131003 other downstream 2462407 4965700 ~ 4975504 (+) False ndufaf6
TU131004 other downstream 2462407 4965700 ~ 4975504 (+) False ndufaf6
TU131005 other downstream 2462407 4965700 ~ 4967968 (+) False ndufaf6
TU131002 other downstream 2464811 4968104 ~ 4975504 (+) False ndufaf6

Expression Profile