RNA id: TU130516


Basic Information

Item Value
RNA id TU130516
length 1143
lncRNA type inter_gene
GC content 0.55
exon number 7
gene id LOC111193421
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 3864990 ~ 3898919 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTAGCGTAGGCTCCACAGCCAGCACTAAGAAGGGCATGACGGTGTAACAGATGGTCAGCTGAGTGGCCGCCCAGGTCACCACATCATAGGCAAACTTCACAGCGGGAGAGCCCAAGAAATACTGGCGGAAGTTTCTGCGCAcAGCGCGAGCAGCGAGGGTGATGGGAATGCCTGTGAGGAAGGTGAAGTAGTATCCTGGATAAACTCCATGCCACAGTGCAGACAGCGCGAAGGTCAGAGGGGTCTGGTAATACGGCACGCGGTCataacacacaCTCTTCAGCCATACCCCAGTCTGAATGTTCCAGTTGTCAATGAATGATTTGAAGCTGGTTGTTGCCTCTATCTCCCAGATGTGGATATTGGAGACGAGGTCCCAGGACACTCTGCCTTTCTTGTCCACTCCACTGATTCCAAACCCTGCTGCGTTATGGATGGCATCCGCGAGTGTCCACGCGAAGTAGAACTTGGATCGAGCCGCCTGGATGGAGACAAAGGCGTAGGCCAGTCTGCTGAGGAATGAGGCCTGGGTCATGAACTCAGGATCCACGTTGTAGGTGATGGGGAACGCTTTAGCGATTGTGAAGAACCAGACCATGCAGCCGACACACACCAGCAGCTTCTGACACACTGCCCGCACAGGCGAAGGCTCTGAGACTGCATCCCAACCGTTTGGCTCTGAGCTGCCCTCTCGTAGCTTCTTCAGCTTGCTCTGCACGTGTCGCCCCTCTATGAAGTCTACGTATTCCTTGTAGTTGCTGCACGGCCCCACCAGGATGCTCATGAAGTTCAGATTGTAGCTGAGGTCATACCTGATCCAGAGGGATGCCGGTGATGGCGCTGAGAGGCCGCAGCCATGTGCAGCCCGTGGTGGTGAAGCTGTCTGATCGGTCCTCCATTCTTCATCCACTCTCCTCCCCCCTTCTTCCCTCAGCAGCCGGACTCAGCGACCTGTAGCTCGGGTAAAAACTCAGCACCGAGTCGCCAGGAGCAGCAGCATCCTTCCTCCGGTCCTCAGCTCTTCATACACTCTATTAAACACTCTTTAACACACTCATTCATAACCTcatacactctctcacacacacgcccAGCAAGTCGTCTAGAAGTTGTGTGTAGTTACCGAGGCGGGGCGCTTCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130602 lncRNA upstream 12499 3866906 ~ 3867199 (+) False LOC111193421
XR_002650517.1 lncRNA upstream 124928 3753172 ~ 3754770 (+) True LOC111193419
XR_002650518.1 lncRNA upstream 127001 3751492 ~ 3752697 (+) True LOC111193420
TU130594 lncRNA upstream 151125 3727932 ~ 3728573 (+) True G96915
TU130590 lncRNA upstream 163297 3713518 ~ 3716401 (+) True G96912
TU130703 lncRNA downstream 33892 3932811 ~ 4195776 (+) True G97000
TU130739 lncRNA downstream 197215 4096134 ~ 4165899 (+) True G97029
TU130748 lncRNA downstream 297029 4195948 ~ 4197937 (+) True G97035
TU130752 lncRNA downstream 327021 4225940 ~ 4287454 (+) True G97038
TU130759 lncRNA downstream 343611 4242530 ~ 4256999 (+) True G97042
XM_022674134.1 mRNA upstream 19826 3759945 ~ 3859872 (+) True LOC103037205
XM_007232052.3 mRNA upstream 138434 3653800 ~ 3741264 (+) False LOC103035455
XM_007232061.3 mRNA downstream 2770 3901689 ~ 3915719 (+) True e2f3
XM_007232062.3 mRNA downstream 5998 3904917 ~ 3915719 (+) False e2f3
XM_022674053.1 mRNA downstream 24742 3923661 ~ 3925572 (+) True LOC103038805
XM_007228887.3 mRNA downstream 262955 4161874 ~ 4164337 (+) True tmem158
XM_007228882.3 mRNA downstream 271527 4170446 ~ 4194866 (+) False LOC103035111
XR_002650511.1 other upstream 2931113 943873 ~ 948585 (+) True LOC111193408
TU129495 other upstream 3071124 799236 ~ 808574 (+) True LOC103040575
TU131003 other downstream 1066781 4965700 ~ 4975504 (+) False ndufaf6
TU131004 other downstream 1066781 4965700 ~ 4975504 (+) False ndufaf6
TU131005 other downstream 1066781 4965700 ~ 4967968 (+) False ndufaf6
TU131002 other downstream 1069185 4968104 ~ 4975504 (+) False ndufaf6
XR_455336.2 other downstream 1913632 5812551 ~ 5850530 (+) True c11h1orf43

Expression Profile