RNA id: TU130602


Basic Information

Item Value
RNA id TU130602
length 294
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id LOC111193421
representative False

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 3864990 ~ 3898919 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCATTCCCCTGTTGAGCTTTAGTTGGtagacagatggtcttaagtttttttctgcaaaatgtcttggtttaCTTGGGAATGAGTTTTtctgttgatgacggcaatccgtccaggccctgaggcagcaaagcagccccaaaccatgatgccccctccaccatgtttcacagttgtgATGAGATTTTGATGATGGTacgctgtgccttttttctccacacatagcattatgtgttccttccaGACAACTCAATTTTGGATTCATATGTCCACAGTATGTTTTGCCATGCCAGCAAt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650517.1 lncRNA upstream 112136 3753172 ~ 3754770 (+) True LOC111193419
XR_002650518.1 lncRNA upstream 114209 3751492 ~ 3752697 (+) True LOC111193420
TU130594 lncRNA upstream 138333 3727932 ~ 3728573 (+) True G96915
TU130590 lncRNA upstream 150505 3713518 ~ 3716401 (+) True G96912
TU130557 lncRNA upstream 284141 3533546 ~ 3582765 (+) True G96888
TU130516 lncRNA downstream 12499 3879698 ~ 3898919 (+) True LOC111193421
TU130703 lncRNA downstream 65612 3932811 ~ 4195776 (+) True G97000
TU130739 lncRNA downstream 228935 4096134 ~ 4165899 (+) True G97029
TU130748 lncRNA downstream 328749 4195948 ~ 4197937 (+) True G97035
TU130752 lncRNA downstream 358741 4225940 ~ 4287454 (+) True G97038
XM_022674134.1 mRNA upstream 7034 3759945 ~ 3859872 (+) True LOC103037205
XM_007232050.3 mRNA upstream 125642 3653800 ~ 3741264 (+) False LOC103035455
XM_007232061.3 mRNA downstream 34490 3901689 ~ 3915719 (+) True e2f3
XM_007232062.3 mRNA downstream 37718 3904917 ~ 3915719 (+) False e2f3
XM_022674053.1 mRNA downstream 56462 3923661 ~ 3925572 (+) True LOC103038805
XM_007228887.3 mRNA downstream 294675 4161874 ~ 4164337 (+) True tmem158
XM_007228882.3 mRNA downstream 303247 4170446 ~ 4194866 (+) False LOC103035111
XR_002650511.1 other upstream 2918321 943873 ~ 948585 (+) True LOC111193408
TU129495 other upstream 3058332 799236 ~ 808574 (+) True LOC103040575
TU131003 other downstream 1098501 4965700 ~ 4975504 (+) False ndufaf6
TU131004 other downstream 1098501 4965700 ~ 4975504 (+) False ndufaf6
TU131005 other downstream 1098501 4965700 ~ 4967968 (+) False ndufaf6
TU131002 other downstream 1100905 4968104 ~ 4975504 (+) False ndufaf6
XR_455336.2 other downstream 1945352 5812551 ~ 5850530 (+) True c11h1orf43

Expression Profile