RNA id: TU130524


Basic Information

Item Value
RNA id TU130524
length 4830
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G96861
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 3502838 ~ 3507691 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTCAGCACAGATCTGGCCAGCTAGCACCAGGCAAGAAAAAAGAAGCAAGCTTCAGTTAAAATGAGCACAAGACCATTTGTGTAGGAgatatgttcattttatttattcgcatctattttattttacagttgaaAATCTATAGGACCCCGTACAGTAAGAGATACATCTTGTGGGGCATCTTCAAAAGAaccagaaggaaaaaaaaaaacttacagcaGAAGACAATACTGATCTGAATTTATACACATTCCTTCATATTTAGCAGAATAAACTTCACTTTACAATTTAATCCTTCATTACAACAAGATTATTtgaaatgttatttatataCTAAAATTAGTATTTATTCTTCATGTTTTCTAAGTGACAAGCGGAGCTCCTGCTCAGcagtgaaatgttttttttttcttctttggaCATTAGAGGAGGCGCGAGTGAGAATTCCCAAAAAGagatttatatacatattttccctttttttaaaggtcGGCGTTTACTGTTAGATGTGTTAATGACGTAgtagtgtgtggtcagtgctaCTGGTGCTCTTGCTGCAGAGTTTACAGATAAattagagagagaagaagagatagAGGGGGAGACGGGGGAAAGGAATTAATGAGGCACCTGCACACGCTAGTTAGTAAACTCAAGCTTCTAGAGCAAAAGAGCAaaagtggtgtgtgtatgttataGCACTGGAGAAAACACCCCTGTTAAAGCTTTGAGTGGCCTGTGGGGTGGGGTAGGGGAGCAGTATTGAAGTACAGTGGGCCAGGAACAGTACTGAAGATaaaagggaaaataaaaaaggtcagTGTCTCTCACACTGGCCTAGGGTCAGCTTtgcctgtccatatctacttaCATTCACAATTCATTCTAATATTAAAGGCAAAGCCTGATCCTAGATCAGCCTAAAGCCTAAATCTCTAAGTCTGTCCCAGCTGTGCCGGAGAgatttacacatatacacacacacacacacgcacacacatgccTGTGACATGGCCAAGAAGAAGATGTGTGCGAGGGTGGAAGACGAAATTAAACAGAATCTTCTTTCcctgtttctgtaaaaaaataccTACTGAGATAGAAAGGAAAGCATTTAACAGATCATTATTTACATTCAAAGggaggaatgtgtgtgtgtgagagagagagagagagagtgtgtgagagagtgtatgtgtgtgttagtagtaGTCAGTCTGAGCTTCACTCCAATCCACTCCAGCTTCACAGAAATAAGAAAAGCagagtttctctctcttttaaagtcttttaaaGCAACATCTCTTGCACTGTCCACCTCAGCATCCTctagtaattaattaattacatgaaATGGCTCTTCTCGCTTCAGCAGAAcgcagcaaaaaaaatcttcatgtCTCAAAAGGTGTCCGAAAACAAACTTTGCTTTTCTGAGTGCAATCTTCTTCAGTCAATCGTCAGTCTCCAGATTCTCAGCTTGTCTTAGAagaaatatatagatatttatatatatatagaactcCTTTTTCATCATTCAAATGAAAGAAATGAGATCGTtttatacagaaaataaaagtctcTCGGTGCAATCCAGGCCACGGGAGGCAATCCACTGTGTCCAGCTTCTCTAACTCAGCAGGAATACAGCGCGAGGGCACAGAACTACACTCCCCACaatgcaccaccaccacctcctcaGCCAGCAGAGTATCAATCAACCTAAACTCCTGTTGTTACACTGAGGCGGTTTGTGGAACGTGGAGGTGTGCTTGTAGCCCTCGCGTTCTGCTTCatcgtaaataaataaacaaacaaacaaacaaacgagaCGAAATAGAACAGAAATGTACAACTGAAAACTTAACATACAGAACATTCTTTAAGCTGCTTGACATTGTCAGCAAACAACAGTAGTCATTTATTAATAAtgacattaaaaacacacaaacacacacacacacacgcagtcaCCCACCCTCAGGCCACATAGTGTCCCTCACACGGGTGTACTCATGGAGCTATACTGGGATTTAACTCAGAGCTAAAAACTGACACTGCAAAATAACagctatatatgtgtatgtatatgtatgtatgcatgtgtgtgtgtttgtgtacacaaaaaaattaaataaaggtgctacaaaggtTTTTGAGCGACGCCAAGATGCGAGACTGAAAATTGAGActgctgaataatttatatCTAATTCTTTTAGCCTTTAAAAGCTTCTTTACATACATCTCTACTACAAAAATGACTCACTTTATGTTTCTACTATATGATAAGATTTCAAACCCATGCAGTTACAACTGGTAGTCAAatagactgaaatctgattgctgtGCGAATACGCAAATCCGCATTTTATTGTGTCATTGTGTCATTATCAATGTATATTGCAATgataaaatctttcaataaaggtaatataatatataacacattttggatatttcaatttatattatttgtagtaACCATCACTGACTAACATCAGAGATGTCATTAAGGAGGAAACAGGCCACTAACTGCAGTATGAATGGGATTTCTTGCTACGCTAATCATGGCCTCCATTCAAGGACAAAGTCTCGCCCTTCAGCAaaatgagccaatcagctttctgCTCTTGTGGAGAGCAGAGAAAAGTCAGAATGCTTTGGAGATGTGCGCAAGCGCAGTAGccatgaaaatccaaaaaattcTATGTATTGTGAATTATTAAGTCAGATGCTATAAAATGTtggtcattttttaaatcagattttcatCAATAATTTAGTGAAGTGACTTGCCTATAAGTACTTTGCTGACATTCATCACAGGGTGTACTACATGAACTGGAAAGTTCACTTTTTTAGATGTTTGTAACTACAAATATACAagtctggaaaaaagagagcacttaaaaattatgagtttcttagattttaccaaatcctaaaaaaacaaaaacctctggaatataatcaagaggaagatggatgatcacaagccatcaaaccaagctgaaatgcttgaatttttgcaccaggagtggcaaaaagttatccaaaagcagtgtgtaagactggtggaggagaacatttcaAAATGCacgaaaacagtgattaaaaaccagggttattccaccaaatattgatttctgaactcctaaaactttatgaatatgaacttgttttctttgcattgttcgaggtctgaaagctctgcatattttttgttatttcagccatttctcgttttctgcaaatacatgctcttagttaccatatttttatttgaaagttgggagaaatattgtccttagtttatagaataaaacaacaatgttcattttactcaaacatatacctataaatagcaaaatcagagaaactgattcagaaactgaagtggtctcttcatttattttttttccagagctgtatgttgccATTCCTTCTCAGTTTTAGGTTGCTTGTATattgttcatatttatattgaaaTTGCACTATATCGATCAAAATTATGAAACACAGTCAGCACTAAGTTGCTGCATTTTTCATGCCATTGTCCATGATTTAATATAACATCATCCTTCATATCCATCTTCCCCACAGAAACAGATCACATGCCCAATGATGTATGGCATGAGGTAATGTTTGGTTGCACTGGCCTTGGAGACACAGATGCATTTCAGTGCTGTAACATGTGGCTCAAACCAACAATTGTCTTTTACTCCTGGATTTTTTATGTAGCTTGgcctttattttaatataattctgGTACTCaggatgaataaaatataaaaccaagTGTAAACAAGGCCTCGCTCAAAGAAACCTTCATAAcatcttcatttttaagagtgtatgtATAATATGTGGGTGGattaaattgtgtgtgtgtacttacaggTTACTACACTTGAGTTTGTGCAGCCTACATGTCTGAGTGAGGGCTCATGTAGTCAgtctacacatacacacaaacccattcacactcacacacacaaacacacacacacatggggaTTGGGCCCCTCTATCCCACAACACAGGGAAGTCACAGGAACCAACAGCCATACAGAACACACGCACAGACGAACACACCCACATAAAAATCTCCTTCCTTCACAAAACAGTACTTGATCCCTCAGTTGATGAGTGATGAATGTTGTCTCGCAGCAGAAAGCGGAGGAGCAGCcatcaaacaaaaatataaatccaATGTTCAGCtttagtgtgagagtgtgagagtgtgtgtgggtaagaGTGCGTCGGCCATCAGCTTCAGTCCAGCATCCATCCAGCCTGTTCCAGGGCGGCTGTCGTCACTGCGATTACTTGACCTCTAATATAGATGGGTTGGACTCCATGATGGCCACGATGATGCGGTCGATGTAATCCTGCAGCCGGAAGTTGATTTCCTCCTGCTTCTGGATGGCCTCCATCAgctgtgcgcacacacacacacacacacacacacacagtaaataacttctgtattatactgtagtataatgaatatatatgCAAGCAGTAGAGCTGAGTgatttatcaattttatcaatgTATTTGAATTtccagttaaggacgatgtgtttttatgaaaatttctCTGAGTTTTCATTTCCACCACCGACGCTACCGTTTGGGCTCCCATAGTTCAGAGTGAGCTAAGCCCCTCCCTCCTGCATGGACACCCTCCGCCCCTCCCTTCTAAATGTGCCAAAAAGGGCaccattttgtttatttctattttgttttttgagagtgtgttcatttatttattttttaagtttgagggtaAGTTGCAGTGTGTCAGTAActaaactatgttggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130439 lncRNA upstream 64142 3433371 ~ 3438696 (+) False ddc
TU130368 lncRNA upstream 379431 3122855 ~ 3123407 (+) True G96761
TU130212 lncRNA upstream 394707 3107781 ~ 3108131 (+) True G96663
TU130187 lncRNA upstream 580664 2921469 ~ 2922174 (+) True G96651
TU130129 lncRNA upstream 916568 2518172 ~ 2586270 (+) True G96614
TU130557 lncRNA downstream 25855 3533546 ~ 3582765 (+) True G96888
TU130590 lncRNA downstream 205827 3713518 ~ 3716401 (+) True G96912
TU130594 lncRNA downstream 220241 3727932 ~ 3728573 (+) True G96915
XR_002650518.1 lncRNA downstream 243801 3751492 ~ 3752697 (+) True LOC111193420
XR_002650517.1 lncRNA downstream 245481 3753172 ~ 3754770 (+) True LOC111193419
XM_022674128.1 mRNA upstream 64112 3389051 ~ 3438726 (+) True ddc
XM_007232038.3 mRNA upstream 130152 3284027 ~ 3372686 (+) False grb10
XM_007232049.3 mRNA downstream 146109 3653800 ~ 3741264 (+) True LOC103035455
XM_007232055.3 mRNA downstream 146109 3653800 ~ 3741264 (+) False LOC103035455
XM_007232054.3 mRNA downstream 146109 3653800 ~ 3741264 (+) False LOC103035455
XM_007232050.3 mRNA downstream 146109 3653800 ~ 3741264 (+) False LOC103035455
XM_007232052.3 mRNA downstream 146109 3653800 ~ 3741264 (+) False LOC103035455
XR_002650511.1 other upstream 2554253 943873 ~ 948585 (+) True LOC111193408
TU129495 other upstream 2694264 799236 ~ 808574 (+) True LOC103040575
XR_002650519.1 other downstream 357299 3864990 ~ 3882676 (+) False LOC111193421
TU131003 other downstream 1458009 4965700 ~ 4975504 (+) False ndufaf6
TU131004 other downstream 1458009 4965700 ~ 4975504 (+) False ndufaf6
TU131005 other downstream 1458009 4965700 ~ 4967968 (+) False ndufaf6
TU131002 other downstream 1460413 4968104 ~ 4975504 (+) False ndufaf6

Expression Profile