RNA id: TU132331


Basic Information

Item Value
RNA id TU132331
length 226
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G98185
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 8020574 ~ 8096610 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gggaaaacaaaactgcactgactttagacttgataataaaacacagtggatcaacaccagcagatgacatgtctctccaaaccatcactgatcatcagtaaattttacattttatttgtaaatcaagggagcagagtctggaggaagagtggagacaaactgctcgaggtctagtgtgaagtttccaccaatcagtgatggtttggagagacatgtctcaacatct

Function

GO:

id name namespace
GO:0001570 vasculogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132266 lncRNA upstream 102844 7915519 ~ 7917730 (+) True G98133
TU132245 lncRNA upstream 185370 7781558 ~ 7835204 (+) False G98115
TU132243 lncRNA upstream 212475 7781558 ~ 7808099 (+) False G98115
TU132244 lncRNA upstream 226491 7781558 ~ 7794083 (+) False G98115
TU132248 lncRNA upstream 227247 7791023 ~ 7793327 (+) True G98117
TU132419 lncRNA downstream 140980 8237590 ~ 8244865 (+) True G98237
TU132426 lncRNA downstream 151245 8247855 ~ 8257070 (+) True G98240
TU132416 lncRNA downstream 180460 8277070 ~ 8277823 (+) True G98234
TU132414 lncRNA downstream 181394 8278004 ~ 8279202 (+) True G98232
TU132437 lncRNA downstream 239816 8336426 ~ 8338117 (+) True G98248
XM_007250806.3 mRNA upstream 119762 7891775 ~ 7900812 (+) True smg9
XM_022674249.1 mRNA upstream 138983 7869033 ~ 7881591 (+) False LOC111193438
XM_022674250.1 mRNA upstream 138983 7869033 ~ 7881591 (+) False LOC111193438
XM_022674251.1 mRNA upstream 138983 7870254 ~ 7881591 (+) True LOC111193438
XM_022674254.1 mRNA upstream 153979 7848099 ~ 7866595 (+) True LOC103045356
XM_007250812.3 mRNA downstream 48354 8144964 ~ 8150644 (+) False LOC103021308
XM_007250811.3 mRNA downstream 48355 8144965 ~ 8150644 (+) True LOC103021308
XM_007250819.3 mRNA downstream 56849 8153459 ~ 8168108 (+) False LOC103023078
XM_007250818.3 mRNA downstream 56850 8153460 ~ 8168108 (+) True LOC103023078
XM_022674258.1 mRNA downstream 76945 8173555 ~ 8197686 (+) True LOC103022775
TU132007 other upstream 889765 7127804 ~ 7130809 (+) True G97931
TU131997 other upstream 950445 7068688 ~ 7070129 (+) True G97926
TU131996 other upstream 954562 7062190 ~ 7066012 (+) False apoc1
TU131601 other upstream 1455571 6532516 ~ 6565003 (+) False G97678
XR_002650533.1 other downstream 766130 8862740 ~ 8895597 (+) True LOC111193444
TU132981 other downstream 1215796 9312406 ~ 9312803 (+) True G98636
TU133263 other downstream 1901102 9997712 ~ 10002046 (+) False G98840
TU133280 other downstream 1963823 10060433 ~ 10069002 (+) True G98845
TU133394 other downstream 2075943 10172553 ~ 10178459 (+) True G98934

Expression Profile