RNA id: TU132721


Basic Information

Item Value
RNA id TU132721
length 421
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G98460
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 8907264 ~ 8907684 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttttggtttatcactgtatatcttataaacatttacgtttccttacattttatgattactaacactcctgttatttagatccttcaaataatataaatactgatacacaggggcgtagcagcaaattctgggccctgtacactctcaatgtcagtgggcccctatccatgccagcaCACAAGGAAcgtggattttcatgggcccctcttcctactcgggccctgggtagtcaagtccacttttccccccactaccacgcctaTGCTGATACAGTACCTGGCCAAATATTTAAGAGCTAATAAACCGAGAAACTCTTGTAATATAGCAGAATGACCCTATTCGCTATCATTTACCAAACGTAGcctaaaaagaaacacactattaattaataaaattcatgCACAAGGGGCGTCCCTAct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132718 lncRNA upstream 12984 8894054 ~ 8894280 (+) True G98457
XR_002650530.1 lncRNA upstream 14002 8862875 ~ 8893262 (+) True LOC111193443
XR_002650531.1 lncRNA upstream 14002 8862875 ~ 8893262 (+) False LOC111193443
XR_002650532.1 lncRNA upstream 14002 8888667 ~ 8893262 (+) False LOC111193443
XR_002650534.1 lncRNA upstream 19632 8886442 ~ 8887632 (+) True LOC111193445
TU132723 lncRNA downstream 2324 8910008 ~ 8910285 (+) True G98462
TU132744 lncRNA downstream 55629 8963313 ~ 8965169 (+) True G98483
TU132759 lncRNA downstream 155485 9063169 ~ 9153581 (+) False G98494
TU132764 lncRNA downstream 175905 9083589 ~ 9086583 (+) False G98496
TU132765 lncRNA downstream 175905 9083589 ~ 9086317 (+) True G98496
XM_007239442.3 mRNA upstream 86075 8818913 ~ 8821189 (+) True LOC103033147
XM_007239438.3 mRNA upstream 92124 8799265 ~ 8815140 (+) False nap1l1
XM_022674288.1 mRNA downstream 8892 8916576 ~ 8926508 (+) True krr1
XM_007239445.3 mRNA downstream 116703 9024387 ~ 9034301 (+) True ccdc107
XM_007239449.3 mRNA downstream 140181 9047865 ~ 9080238 (+) True LOC103035505
XM_022674292.1 mRNA downstream 272101 9179785 ~ 9195720 (+) True cpsf6
XM_022674047.1 mRNA downstream 307168 9214852 ~ 9268400 (+) True LOC103042523
XR_002650533.1 other upstream 11667 8862740 ~ 8895597 (+) True LOC111193444
TU132007 other upstream 1776455 7127804 ~ 7130809 (+) True G97931
TU131997 other upstream 1837135 7068688 ~ 7070129 (+) True G97926
TU131996 other upstream 1841252 7062190 ~ 7066012 (+) False apoc1
TU131601 other upstream 2342261 6532516 ~ 6565003 (+) False G97678
TU132981 other downstream 404722 9312406 ~ 9312803 (+) True G98636
TU133263 other downstream 1090028 9997712 ~ 10002046 (+) False G98840
TU133280 other downstream 1152749 10060433 ~ 10069002 (+) True G98845
TU133394 other downstream 1264869 10172553 ~ 10178459 (+) True G98934
TU133435 other downstream 1586107 10493791 ~ 10498518 (+) True G98967

Expression Profile