RNA id: TU133275


Basic Information

Item Value
RNA id TU133275
length 2808
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G98841
representative False

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 10049478 ~ 10053331 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taactccttaattacggcaacttttagactctttggcccgtttttctgcgctataactgcgcaccctctccgcttttagactctttggcctgttttttctgcgctagaaatgtgcactctctccgcttttagactctttggctcgtttttttctgcgctgaaactgcgcaccctctccacttttaggctctttggcccgtttctgacacctagcgttcaaactttgaatctcacattataaaaacctgcttaacagcgggccaactttcattctatttctaaaatacctctcGGGCCGctacaaaaaaggaaatggcccgcaaatggcccgcgggccgtaatttggacacccctgcactacAGTATCCGAAGAGAATGGAGAACGAACATCCGGATTACTCCATCACTCACTGACAGCAAAAGCTGGGACAGCTGGAACATACTTACACTTACTGGTGATCCTGTTTGCCATCCTTTATCTATTGTCATTTATATAAAAGCAGGATTAGCTTATGTGCTGCTGTGTTCACATTCTGAGTCATTTTCCAACCTCAGAGGATTCAGTGACATTTGTCGGACGAAAACACATGTAGGGTGAAGAATATCATTTGAATTttaatgggggaaaaaataagagatcacttcagtttctgaatcggtttctctgattttgctatttataggtttatgtttgagtaaaatgaacattgttgttttattctataaactacagacaacatttctctcaaattccaataaaaatattgtcatttacagcatttattcacagaaaatgagaaacggctgaaataacaaaaaaagatgcagagctttcagacctcaaataatgcaaagaaaacaagttcatactcataaagtttaagagttaagaaatcaatatttggtggaacaaccctggtttttaatcacagttttcatgcatcttggcatcatgttctcctccaccagtcttacacagtgcttttggataactttatgtctgcTCTCCTggttttccagaggttttcaatgcgcaatttggtaaaatcaaagaaactcatcatttttaagtggtctcttatatctatctatatatcttatatcttatagAACTCTATATGCATAGTCTATGCTGAGTGCTGTTTAAGCATACATACTCAACTTTACTCAGATATGCTCATAACTATCTAAGTGGAGCTATTCCATGATCTCACAGTGCCAGTGGGTCAAAGTGGTCgatatactgttatactgttggAAAACATTACGCATTGAATTTGAGAATAGAGAAAGATAATGTTGGATTCTGGTCAAATACCAGTTGCGGTTGGTTGTTGTTTAgcagtaaattaataaatcctCTTTTTATAAGTCactctactagagacagatgcCTGAATATGGTTGGCATGTGTGAATAATTAGTCTGTTACTGTTTGTCAaatatgtctctttctcttatatatgcataattaataaacaaactaTCCACTGCTGTTTATCTCTGGAAAGTTGTAAATAGTGTTCTTGCagcaaataatagaaaatacaaAGTCGTTTATTCAGTTTAGTGCAATTTAAAGATCAGACGCTACAATGTTTTGTCTGTTCAGTGCTTCCACATCAGTTGATATGCAGGATCAGGTGTTTTGTTGCCTTAAAAGGGCCCATATAGATCACTGAGACCACCACAactgagaccacttcagtttctgaaacagtttctctgattttgctatttataggtttatgtttaagtaaaatgaacattgttgttttattctataaactacagacaacatttctcccaaatttctaataaaaaattgtcatttggagcatttatttgcagaaaatgagaaatggttaaaaagagctttcagacctcaaataatgcaaagaaaacaagttcatattcataaagttttaagagttcagaaagaattcaaaaatcaatatttgttggaataactctggttttagtcacagtttttatgcatattggcatcatgttcacctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtggtctgatggcttgtgatcatccatcttcctcttgattatattccagaggttttcaatttggtaaaatcaaagaaactcatactttttaagtggtctttattttttcccagagctgtatatatatatatatatatatatatatatacacacacatcacatgaACGCTATGACTAATCCAAGCATCTCTGTGATTGGTCAGCGACACTTGTAGCACACGATTAAACATTCCGTGATTGGTTAGATGGCACATTTGCGACCTTAAGCCTTCTGTAGATCAGTATTTTAAAGGCTAATGTTGCCATAGAAGCAGAACAAACAATACGTATTGTTCTACTCTCTTCAGGACCCACCTCTACTGCACACATTCCTGTTTTCCCTGCATCTGAGtcataatataaaattattatccATTGTTTAATCCCATTAAAACACACTGAGCTGAGTAAACACAAAGCTGTGGGAAGGATATAGACTTATTACATGTTATACAGCGGATCTCGGTCACTATTAAAGCCTGTTTGCATTGAAACTGTTACTTGCGCTGAATAATTCCAGTGCTGGACGGCTTTCCTGGGTTTCAGCCTGAAAACTGCATGTAGAATTGTTAAATTTGGGATCAGCTTGAGGTTATACTGAGGGCCAAAAGTGTATTCATCTGTACTGTatcttataaataataaaatgctggattaaaaccatgaaactGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133250 lncRNA upstream 22127 9968591 ~ 10027351 (+) False G98829
TU133251 lncRNA upstream 22127 10020151 ~ 10027351 (+) False G98829
TU133253 lncRNA upstream 45614 9947394 ~ 10003864 (+) True G98831
TU133396 lncRNA downstream 121397 10174728 ~ 10175861 (+) True G98935
TU133397 lncRNA downstream 121550 10174881 ~ 10175861 (+) False G98935
TU133400 lncRNA downstream 130067 10183398 ~ 10197911 (+) True G98938
TU133416 lncRNA downstream 293156 10346487 ~ 10348593 (+) True G98954
TU133417 lncRNA downstream 293156 10346487 ~ 10348593 (+) False G98954
XM_007250873.3 mRNA upstream 1507 10041913 ~ 10047971 (+) False pafah1b3
XM_007250874.3 mRNA upstream 1507 10041969 ~ 10047971 (+) True pafah1b3
XM_022674316.1 mRNA upstream 1507 10041969 ~ 10047971 (+) False pafah1b3
XM_007250876.3 mRNA upstream 15210 10027394 ~ 10034268 (+) True LOC103040337
XM_007250877.2 mRNA upstream 24210 10020638 ~ 10025268 (+) True LOC103040655
XM_022674322.1 mRNA downstream 325898 10379229 ~ 10451391 (+) True cic
XM_007250864.3 mRNA downstream 415844 10469175 ~ 10488569 (+) True gsk3a
XM_007250865.3 mRNA downstream 415844 10469175 ~ 10488569 (+) False gsk3a
XM_007250866.3 mRNA downstream 415844 10469175 ~ 10488569 (+) False gsk3a
XM_007250856.3 mRNA downstream 718167 10771498 ~ 10778123 (+) True rabac1
TU133263 other upstream 47432 9997712 ~ 10002046 (+) False G98840
TU132981 other upstream 736675 9312406 ~ 9312803 (+) True G98636
XR_002650533.1 other upstream 1153881 8862740 ~ 8895597 (+) True LOC111193444
TU132007 other upstream 2918669 7127804 ~ 7130809 (+) True G97931
TU131997 other upstream 2979349 7068688 ~ 7070129 (+) True G97926
TU133280 other downstream 7102 10060433 ~ 10069002 (+) True G98845
TU133394 other downstream 119222 10172553 ~ 10178459 (+) True G98934
TU133435 other downstream 440460 10493791 ~ 10498518 (+) True G98967
TU133597 other downstream 968351 11021682 ~ 11027417 (+) False LOC103033199
XR_002650542.1 other downstream 975491 11028822 ~ 11047690 (+) False abhd16a

Expression Profile