RNA id: TU133437


Basic Information

Item Value
RNA id TU133437
length 1898
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G98969
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 10453242 ~ 10455166 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGAATTCACATCACTGGGCCCGAGGCGAGAGCTCTACTCGGACCTTCTCGCTTCGTGCCGGGTTTGTCCTGTTTTAGCGTGTTTTCTGCAGTCCGTTCCATCGTGGTTCTGAGTTCATCAGGCTGGTCATGCTGGGCTTAACCCTGGCTCCAACTAGATCGCTTCACTTTTCTGTAGccctgtttttcttctttttaggAATGCTTTACACTGTGACTGATCATCTTCTGCTGCATGTGTAGCATACAGACTATTACCTAATACAAAGTGTGACCTGTTTCCTTGTATCTCTGTATCTGTCAGTTTAGTATAGACTGTGTGGCCAAAGTATCTGAATTTCTGCTCCTCCACCATTTCTGCTAAAATAAAGggtatttatcacaatattacaatattatagaCTTGCTCTTGCGGGCTTCATTGATatctagtttttatttccactgCTGACAACAGCTTTAAATGTAGGTTAATACATATTGTGGAATCCCACAGGGCTCCGTTTTAGGGCTTATAAAGTTGTCATTAATTGTGACTTTAAGgcgcaatttttttttaagtcaagcTAGCGCtcaatgttaatctacacagaattcTTTACTTAAAACCTTTCAATTCCTTTTCATAaggtaaagcgcttctgtttatctacagtaacttagatttccagatttttttcgAAGGCTAGCCAGACAGCTctgcactgaggaaccctgagtgttccaataagggcgatattagctagctagcagtttgtcccacatagcttgttttaacacagtaaatgggAAGGCTACAATcaaatatactcgcctctgaatggcaagAGAGCTaagtgctagccatggttaaGAACAGGTTACAGGCagataattctcacctctgaacgacaaaagagctaactagtgcttagtgcggttagcagcttatgctaatactgctcaaaACTATAACCCAGtggagaggctttactgctactaacaaattgactggtaaaattcatattatAAGGCTTGCTcttgatttttggggaaaaatgaaaggattttaagtgcgccttatagtgcgaaaaatacagtaagtggGCTTACATAATAGATGTTAGGActttgctgtaaggatttgattgtattcagccaCATCATAGAGCATCAGTTACTGGTGAGACGTCTGTTACTGGATGATGTTGAATAAATCATTCTACCACTCAAGTTCCTCCTAAGAACTGCAGAGCCCAAATGTCTGAGgcttttattctattatattatagatTATACACGATTTGTGAACACCTGTTAAAAATAGGTGCAAATGCAAGTAGTTAAATGCAGATGTTTAGAATTCTGGCAAACTCTTGTAATTTAAGCTGAATTGTTTCTATCTTCCTCctcatactttaaaaataacattgcccAAGTTAAAACACAGGGCAGACTCCTCTACATTTACAGTAAGATCTTATATTAACTGAAACAACCACAGAATTTGAGGTATTGGTCCTTAACTGTATGCTTCAAATGCAGCAGACACAGATCAGGTTAAAGAACGCTGGAGCTGAACATTCAGGCATTTCACGCTCACTGTAACAGAGCCAGCAACCTGTCAGATACTCATTTCATAATTCTCAAAACTCCATCCTCCCTCAATATCCCCTCCAGCCAGCTATGGCCCCTCCATTCCTGTAGTTATCCAGCCCAGCCCCACAGTATGACCATCTCAGTATGCCACTATCTGCTCCATCCCTTCATGTCACATCAGCTGCAGGTTGTCCAGTGTGATGGCTTCCATGTTGACCCCGCCCTCCAGTGCAGTGTGGTAGAGCTCTATGGCCTCGGCGAGGTCGCCGCTCGTCTCTATGATGGCTATCGTCTCCCCGAACTCATTACACATGATGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133416 lncRNA upstream 104649 10346487 ~ 10348593 (+) True G98954
TU133417 lncRNA upstream 104649 10346487 ~ 10348593 (+) False G98954
TU133400 lncRNA upstream 255331 10183398 ~ 10197911 (+) True G98938
TU133396 lncRNA upstream 277381 10174728 ~ 10175861 (+) True G98935
TU133397 lncRNA upstream 277381 10174881 ~ 10175861 (+) False G98935
TU133434 lncRNA downstream 48785 10503951 ~ 10510431 (+) True G98966
TU133530 lncRNA downstream 264855 10720021 ~ 10720575 (+) True G99045
TU133566 lncRNA downstream 369309 10824475 ~ 10824863 (+) True G99073
TU133568 lncRNA downstream 377000 10832166 ~ 10832404 (+) True G99075
TU133581 lncRNA downstream 404042 10859208 ~ 10861238 (+) False G99083
XM_022674322.1 mRNA upstream 1851 10379229 ~ 10451391 (+) True cic
XM_007250873.3 mRNA upstream 405271 10041913 ~ 10047971 (+) False pafah1b3
XM_007250874.3 mRNA upstream 405271 10041969 ~ 10047971 (+) True pafah1b3
XM_022674316.1 mRNA upstream 405271 10041969 ~ 10047971 (+) False pafah1b3
XM_007250876.3 mRNA upstream 418974 10027394 ~ 10034268 (+) True LOC103040337
XM_007250864.3 mRNA downstream 14009 10469175 ~ 10488569 (+) True gsk3a
XM_007250865.3 mRNA downstream 14009 10469175 ~ 10488569 (+) False gsk3a
XM_007250866.3 mRNA downstream 14009 10469175 ~ 10488569 (+) False gsk3a
XM_007250856.3 mRNA downstream 316332 10771498 ~ 10778123 (+) True rabac1
XM_022674323.1 mRNA downstream 544759 10999925 ~ 11027424 (+) True LOC103033199
TU133394 other upstream 274783 10172553 ~ 10178459 (+) True G98934
TU133280 other upstream 384240 10060433 ~ 10069002 (+) True G98845
TU133263 other upstream 451196 9997712 ~ 10002046 (+) False G98840
TU132981 other upstream 1140439 9312406 ~ 9312803 (+) True G98636
XR_002650533.1 other upstream 1557645 8862740 ~ 8895597 (+) True LOC111193444
TU133435 other downstream 38625 10493791 ~ 10498518 (+) True G98967
TU133597 other downstream 566516 11021682 ~ 11027417 (+) False LOC103033199
XR_002650542.1 other downstream 573656 11028822 ~ 11047690 (+) False abhd16a
TU133585 other downstream 838926 11294092 ~ 11302885 (+) True LOC111188200
TU133586 other downstream 838926 11294092 ~ 11302885 (+) False LOC111188200

Expression Profile