RNA id: TU133586


Basic Information

Item Value
RNA id TU133586
length 3743
RNA type TUCP
GC content 0.40
exon number 4
gene id LOC111188200
representative False

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 11294092 ~ 11302885 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAATACCTACCCCGCTACAAATGCCCTGAAGAGCCCGGGCCAGGAAGACATGATGGTGGACGGTGTTCCTTGGGGTTTGGGTCGGCTGTTCGGAGCTTCCAAAAGCCCCAGCAATCCACCATCAAAAAGgcgTCCCTCTCAGTGGCTGTCTCCTGGTATAACGGCTCTTACCCGGATGACGGGAGCAGGTCATGCTTTCCTACCTGACAAGATTGAAcctggaagaaaaaaagagaaggagaaagacagaaacgaagagagaaaacaggctgACGATCAGCCAAAACCCTTGAGGGCGGTCCGAACCCTGTGCGACCATGCTGGCACGGGAGCAGAGCTGACCTTcaggaaaggggaggagctCATCGTGCTGGGCGGCGTGGACCAAGACTGGATTCGCTGTCGCCAAGGAGACAAGGAGGGCCTTGTTCCTATCGGTTACGCCTCACTGATTGCATGACGCGGAGGCTCCCCATTGGACGatgagcggagcggagcggcaCGCCAGGTCGCTGTCGAGTGTCTGTCGAGTGTAGTGTTTCAGAAACTGCGTCAAGTGTTCTCACCTCTGTTGCCTGGTTTGTGACGTcacaaatgtttgttttttgatttatttgcttcttttttttttctctctttgcaACTCTTAGCATTCTGTTATACACaagcatatatatacatatacgcgTTACTGTATAAATTCTGCATATACATAaagctatatatacatatatataaaaaaaatagattcatactattaaaaaaaaaaaaatgaacaagatagatagacagatagacaaacaAGACATAAAGCTGAATAGTCAGTATAGTGTAGTGATTCCGTCCGCGATAATAGTTTTCAGATAGATTTCAGATTCCATCGTGTATCGTTGCATTATGAAACATCGCACTCATGTTGTTGTACAGCTTAGCCCAAATTTAAAGCTTGCTGATGATGGATTGTAAAGGACAGCTTAGTCTATTGGCGCTACTTTTGGGGTTTTACTCAATCAGGAATATAGCAATGAAGAAGCCCCTTGCACTGTATTACAAAGTAGCATCGTTATAACGTACAATTATGGAGATATTAAGATGTATTGCGTATATTTCAGATGGGTTAGGCCTAAAACTCAGTAATGAAGTCCAGTACTATATTTAACGTGCACTGGAAATTAGTTTCTGAGACATGAActcatgtgtgtttatgtgtgtttatgtttattcataaaTTTTTACCCATCCCCCTTCACGCCATCTTTATCTCATCTATATCTCATGATCCTGACCTTGTTCCAACTATTATCGCAGTTGTTTCTCTCAGTAGTGCTAATAGAGTGTTTTAGCGTGCTAGTGTGCTGAGCGTCCCTATCCGTTCTCGTTAGAAGATCCCATCACTGTAGGCTTGATATCGATGACTATGCATACACCGTACTGTACTATTCGCAAGACTCGTCGTCAGGGGCAACCACTTATGACAGACTTCatatattttactcatttttaatcGGTAACCTGTTCGTGAACGTGAATCGTAAGTTGCATGAGGAAACTCCATATATTGTCAGTCTCAGAAACAAATAACAGTGCAATATCACGTGTATCACTGCATTTCAGCCTTAAAGGAACACTTGAAAATTTTACATCCTTGTCCGTAGGCCAGTCACAATAATTACGTTACGAATtatgaaacaataaatgaaaatgacgTTGATCGTTTTTGTGCTTTTGAaattgtatactgtatacacacacctAGTACagatttactgctgctgtagtctttcacACGGTTAATTTAAAATCTTTACTTCTGTTTGAACGCAGatcattacttgaatttcttgtctcttaatgtgtttgagagcatcagttgtaaagttgtgaagaggtagagttacaggtatacagtgaataactctgTTTGATTAATGGGAAAGTCAGTCAATTCgaaacatttcaaaaacttATACAAAatatcctcaaatgcagtcaaaaagaccataaaaacattatgatgaaactggttctcatcaggaccaccccagtaaagaaagagcaagagttatctctgttgtacaggataaattcatcagagttaccagcctcagaaaccgcaagttaacaaacagctctgcAGATAAGagaacctaaatgcttcacagagtattttggttttcacttttaagttattatttttctgAATTTATGTTCACAGTGATCGtgatcgtgacaggcctacagcTCTGTATCTGCTGTGTTTGTAGCATCCGCTCGATTAGCACACACAGACCATCCTTTAAACACGATTCCCTGAACATAGAACAAAACACTGCAGATGCAGCCGACAGAGATTAGGATGAAATGCTGAAGTGTTCCTTTAAGTGCACATCAAAATACGCAGGGGCAATCGCTGTCACAGTGGCTGATGAGTCGACTTCGGTTGATTGATGGCCATCTGTGCCTGCTGCGACATGCTAGTTTTGCATGGATGTTggcttcatttctttctttctctctctctctctctctctctcgctctctcactctcttttctctctctcacaaacacacacacacacacaaatgtgccGCTAAAACTCAGAAACTGTGCCAGTTTACAGCCGCAGAGCCATTGGCAACACACAGCACCGAAAACGCAGAGCCTTTCCAGCACTTTCTCGCTTATCCGTCTGTGGATGTGTGACTTAAACCTCCATCTACATTCTTTAGGGCTTTattctagagcaggggtgtatAATTTTAGCTGATTTGGAAGTTTAAATCCATCAGATTGATTCTAATCCACTAGAAAATCTAGCAaataaaattctgtttattttaagaCATCTTTTTCTAAAGCATTCTAACTGATTTAACTGAGTCAGCCAAGACTGGCCATACTGTTTGCTGTCCATAATTGTGCTTCTTTGATATAGTGCTGGAGCTACGATGCACTACTCACATTACAAACAATATAATTCAAAAGTtactaaatacacacacatacaaacacatactTTTGCTAAAGCTCTTGGAACCTAAATATAAGTCTGAGCAACCGGAACCAGCACGGTGGAAAACTGACCAATCAAAAGGCTATTGTGGCTCTGCTCTCTCATTAAGTCTAAGCCACCGTCTGAGGGTGTAATCTCACCAATTAAAAGGCTAACAAAACTCCGCCCTCtctttaataatttatagtccCCACCTATAATCTAGTGTGAGCCTGTATTTATATGGGAAATAGAATTAGGTGATTGATGCTAGTAGCTACATTAGCTGTGGAGCTCCAGCGCTAATCTAAACAAGCTACAATTGGACACCAACCACGTCTTGATTGATTGTatcatctggcttatgaaaaCTGAAGctacattagttttttttcactAAACCATTTCTGTACCAGGACAGTGGTGTTAGTGCAAATGAACCGGAATGAGCTGCGAACATGttaaacagctttttaaagTTGAGAATAATGTTTAAGACATACTtaagttattattttatttcatcatttaaaaacctCCACCTCTGCTTTTGTATCTTCCAATGAATTAAggacacataaaaaatataaattataaagctAATAATTGTTTAATTGGAGCATTTTTCCTGATTTTATGTTCAGCAATAACTGAACTAATATCTGAGGGCCTTAAGTATGGAGGTCCAGGCTTGccaaaagataaataaaatataacaaaaataaaaagataaaaatcatcagaaacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133643 lncRNA upstream 118103 11166429 ~ 11175989 (+) True G99119
TU133636 lncRNA upstream 139092 11145057 ~ 11155000 (+) True G99115
TU133630 lncRNA upstream 153023 11134690 ~ 11141069 (+) True G99114
TU133614 lncRNA upstream 190427 11059872 ~ 11103665 (+) True G99105
XR_002650540.1 lncRNA upstream 301689 10988307 ~ 10992403 (+) True LOC111193451
TU133812 lncRNA downstream 58356 11361241 ~ 11364273 (+) True G99244
TU133814 lncRNA downstream 58356 11361241 ~ 11364273 (+) False G99244
TU133829 lncRNA downstream 101896 11404781 ~ 11404990 (+) False G99255
TU133831 lncRNA downstream 101896 11404781 ~ 11405210 (+) True G99255
TU133859 lncRNA downstream 206378 11509263 ~ 11510375 (+) True G99269
XM_022674337.1 mRNA upstream 12622 11187149 ~ 11281470 (+) True LOC103022365
XM_022674332.1 mRNA upstream 166183 11112055 ~ 11127909 (+) True zfat
XM_022674328.1 mRNA upstream 192993 11079535 ~ 11101099 (+) False LOC103032145
XM_022674343.1 mRNA downstream 106573 11409458 ~ 11420340 (+) True dap3
XM_015607652.2 mRNA downstream 118649 11421534 ~ 11443382 (+) True gba
XM_007256500.3 mRNA downstream 162280 11465165 ~ 11470103 (+) True LOC103038511
XM_022674347.1 mRNA downstream 173659 11476544 ~ 11512742 (+) False LOC103045287
XM_022674344.1 mRNA downstream 173660 11476545 ~ 11512742 (+) True LOC103045287
XR_002650542.1 other upstream 246402 11028822 ~ 11047690 (+) False abhd16a
TU133597 other upstream 266675 11021682 ~ 11027417 (+) False LOC103033199
TU133435 other upstream 795574 10493791 ~ 10498518 (+) True G98967
TU133394 other upstream 1115633 10172553 ~ 10178459 (+) True G98934
TU133280 other upstream 1225090 10060433 ~ 10069002 (+) True G98845

Expression Profile