RNA id: TU133831


Basic Information

Item Value
RNA id TU133831
length 430
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G99255
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 11404781 ~ 11405210 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcttttattttgtagttttctCCTACGGCGGCCCGGAGGAGCAGGCGGCGCTGGAGAAGTCATGGCTGTGTAGCTGTATAATTTTGATGTagagaaaatattattaataataataaatattagtgAAATTTTTAACTGCGTTATTAAGCTGCGGTGTGTGAGGGGCGGAGTCTCTGTTGGAGTGGAGGTGTTATATATATCTGAAAGCGGTAAGAGCTGAATTCAGCTGCGCTGTTTCTCCACACGCGGCTCAAGGTTACATTACTCTCCCGTTTACTGATCATATAATCAATAACACCATCGATACCGGCCTGATATCACTGTAATGCTCTAATACTGCCTGTGATACCGCTACAGACAAACCCGAGAGCAGCGTCTTTACTGTATAGAAATAACTGCGCAATTTACTCTTAAATTAgggcatgtatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133812 lncRNA upstream 40508 11361241 ~ 11364273 (+) True G99244
TU133814 lncRNA upstream 40508 11361241 ~ 11364273 (+) False G99244
TU133643 lncRNA upstream 228792 11166429 ~ 11175989 (+) True G99119
TU133636 lncRNA upstream 249781 11145057 ~ 11155000 (+) True G99115
TU133630 lncRNA upstream 263712 11134690 ~ 11141069 (+) True G99114
TU133859 lncRNA downstream 104053 11509263 ~ 11510375 (+) True G99269
XM_022674340.1 mRNA upstream 104918 11294098 ~ 11299863 (+) False LOC111188200
XM_022674337.1 mRNA upstream 123311 11187149 ~ 11281470 (+) True LOC103022365
XM_022674332.1 mRNA upstream 276872 11112055 ~ 11127909 (+) True zfat
XM_022674329.1 mRNA upstream 303682 11079535 ~ 11101099 (+) False LOC103032145
XM_022674343.1 mRNA downstream 4248 11409458 ~ 11420340 (+) True dap3
XM_015607652.2 mRNA downstream 16324 11421534 ~ 11443382 (+) True gba
XM_007256500.3 mRNA downstream 59955 11465165 ~ 11470103 (+) True LOC103038511
XM_022674347.1 mRNA downstream 71334 11476544 ~ 11512742 (+) False LOC103045287
XM_022674344.1 mRNA downstream 71335 11476545 ~ 11512742 (+) True LOC103045287
TU133585 other upstream 101896 11294092 ~ 11302885 (+) True LOC111188200
TU133586 other upstream 101896 11294092 ~ 11302885 (+) False LOC111188200
XR_002650542.1 other upstream 357091 11028822 ~ 11047690 (+) False abhd16a
TU133597 other upstream 377364 11021682 ~ 11027417 (+) False LOC103033199
TU133435 other upstream 906263 10493791 ~ 10498518 (+) True G98967

Expression Profile