RNA id: XM_022674115.1


Basic Information

Item Value
RNA id XM_022674115.1
length 5601
RNA type mRNA
GC content 0.48
exon number 16
gene id cobl
representative False

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 3147369 ~ 3272603 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taccggctggaaggggcCGCGGCGGTGACGGGATTACAGCTACACTAGCAGAATTCCTCTGTGACTTTTCCCGAACGAGCACGCGACGAGTTtcgtttttaataaactgaCAATGAGTAAATATGCGGATTTCAGGGCTGTGCACTTTAACCAGCTGTGAATGGCATTTGCCCTGAGTGGAATAGTCTGAGAAGAACATTGGAAAGTGAATGTAGTCTCATAAGCAACAACTCTACAATAAAAATATGGATTTGAGCACTTCTTCAAGACCTCCAGTTGGGAGGAGAATGAAGGCCAAGGCACCCCCTCCGCccccagctcctcagcctgCCCCTCGCAAGATCTTCCGCAATGCTGTCCCCGATGGAGGAGGGTCTCCAGGAGGAGACACCAAGGAGAACATGCTGCGGCCTATGGTGGACCTCCATATTACCTTGCCTGATGCCTACCAGACCACGGTCACTGTGGACGGCAGGAAAGCTCTGATGGATCTGCTGGTGGATTTGTGCAGTCAGTACCACCTGAACCCAGCTTACCACACTCTGGAGCTGCTGTCTCCTGAAGCACATCCTGTGGCCTTTAAGCCAAACGCCCTGCTGGGTGCACTGGATGTGTCCTGTGCTCTGATCAAAGCGAGAGTGACTGAGGAGCGAGTGGTCAAGAAACCGCCACCCAGAGTGCCAGAGAAATCAGTGCGTCTAGTGGTCAACTATCACCGAGGTCAAAAGGCAGTAGTGAGAGTGAACCCCCTGGTGCCACTGCAGAACCTTGTACCGGTCATCTGCCAGAAGTGCGAGTTCGACCCGGCCCACGTGCTTCTGCTCAAggacagcatcagcagccacgAGCTAGACCTGCACAAGTCCCTGTCTGAGCTAGAAATCCGCGAACTCTATGTGCTGGACCAGACACTGGAGTCTATCCGCTCCAACACTCCAAGTACCAGTGGTGGGGAGAAGAAAGGGCTTCTGGGATTCTTCAAGTTTAACCGGAGGAAATCTAAGACAGAGGAGCAGAGTGCTGAAGACATGGATGAACTTGATGATAGTGTTATGCAAAATACAGGCACTTATGAGAATggtTTGTCTGTGGTCGTGGGTCCCTGTGTGGAGGTGCGGCCCAACACTCTGGGTCAGTCTCAGTCGGCCATGAACCTGTCCAGATTGTCTCCTAAGTTCGAGCCCAAGAAGCGGAGAGCTCCTgctcctccccctccctcagctcacacacacacagctgccctGGTCTCACAGGCAAAGCCAGGATCCCCACGCCTGGACAGCCAGATGAAGAAGCGCAAAGCACCAGCTCCGCCACCCACCCCGGCCCCCAGCACCCCTGAGCTGACACTCACCTACCCTCCTGCCATAGTCCACGTCCCAGctccggcttcagctctgtccaGGACCTCCGAACCAACCCAGGTCCTCAGCTCCACACTAGTGGCTGACGACTCTCTGTCTGACCTTAGCCACAGTATTGAGGACTCTGAACCCGTTGGCTCTGTCTGCAGCAGTTCCAGCGATGATGCTGCTGCCGAATCTGCCTCCAGCAGCAGCCTGGCTGAGGAGCCCATGCCCGAACCGGTCTACGTGAGAGCGGCGAGATTTACTCCAGTGCCAGTACCAAAACCAGAACCAGAGCAGGAACAGAAGCAGGAAAAAGAACAAGAACCACATCCACAGCCTACTCCTAGAAACATTGTTAAACAAGAGCCAGGCCCAAGTTCTACAGTGGAGGAGACAGAGGACACAGAATCAGTCCTAGAGCTTAAGATGGAGGAAGTGGAGAACAACCGTCACAGTGCAATAGGGTCTGAGAGTAACGTGCCGCTCAAACCCAGGCGGAGTCCTTTACAGAAGCAGACAGAGCTGACCAGCTCCTATCCCCCCTTCAGCCCTCCCCCTCCTATTGGACAAGACCTCCAGCAGACCTCAGAGGACGTCCATATAGAGACAGCACCTCACTCCTGGCTACATTCAGTGGAGCCGAAAGTGGAGCAGGAGGTAGAGACGGTCTCCATGTGCAGCAGCGAGAGCTTGGCGGATCAGGGCTACGCTGCATCAGAGGGTATGGCTGATGACTCGGGCCTTCTGAGCTCTCCATCTGACCTGACTCAGCCCACCTCCCCAGAGGACAACATCTCCCTGACCCATGACCCCTCGCCCAGCCCCAGCCACCAGCCCAAAGACTGCTCCAGCGACAGCGACGAGGGCTGCGCCACCTGGGGCTCACGCCACAGTGGAGGGGCACGACCAGGGAATGAGACAGACAGGAGAAAGCACAACTATGAAGAGGAGGCAAAGATTACTGCCGAAATCAACCTTACCTTGGCCGATCTGGATGCTGATCTAGCAGAAGCGAATCACTCTGACGAGGCACCTGCATGCATGGTTGACGAAATCCCTGTGTCGGTGGTTGATGTGGACATTCCAGTTACCACCATTGATGAAGTCCTTGAAGATCTGACCAGCCGGAGACCTCATGGAACAGGGCGTGGTACTGAGGGTGAAAGCAGGAAAAAACAGGACGTCACTGATAGCTCAAATAAGCTGAGTGTGGACgtccaaaacaaaaacaacaatgctcgTGTGGCAGACAAAACGATGCTTAGTCAAACCCAAACAAATCACATTGAGATCCCAGAAAAGGTGATTGTGAGCCCTGTTGTTATAACCAAAGCTCAGCCAGAGAAACCTGAGGTTGTGAGCTGCAGTGTTCAGCAGAGGTCTCAAAGTCCTGCTGTTCAGAGTGTTTCAGAGAACAGACTCAAGCCTCCACCCTTAGTGCGGAGCTACAGCTTGGAAAATCCTGAAATGCAGAGAGCTTTGTCTTCTAAACCACCCACAGCAGCTCAGATTAAGATCACCCAGAGCCCTGTGTCAAAATTTGGCTTGAAGACCTTCACGGTCATTCCTCCTAAACCAGCCGTGTCCCACACTCATAAACCAGCAGGAACCCTTAGTACAGGCGCCATTAAGATTGACGAGTTTGGTAACATGGTCAAACAGCGAGCAGCTAGGCCAGCCTCAGTCCAAGACAAATGTGATCACACTGATGATGCAACTAATGACCCAGCTTCTCCACTCCTGGGCAAAGCCAAGGCCTTCTGGAGTTCAGCTGAGAAGCAGGATGCAAGTTCCACAGCCAACAAAGAATCTCCTGTGAGGATACGAGAAGCTGAAGTGCCTAAACCTGTCCCTGTTCCTGTAACAGTCATTTCTCAACAGCCTCCAGAGAAACCGAGTGTTGACCAAGTGGAAAAGCTGAAAGAGGCCAACGGGTCAACAAACCACTCGGTCTCTGCAGCGATGAACAAGCTTCCTGCCTCAGATCCTATAGAAACCACCTCTTTCTCAGAGCAGAGGAAAAATCTTTTCTTCCTCAAGCCTTCCAGAAGAACCTCAAGCCAATATGTGGCCTCGGCTATTGCTAAATACACCAGCATTCCCTCAACCAAGTCAAATGGTCTTCAGGAACTGCCAGAATCAACAACTGCTGGACAAAGGCAACTTTCTAAGCAAAACTTTAAACCAGAGGTAAGATCCAACTATAAGGATCCACATACCTCCACAAATGCACCCACAAATCCAGTGCCTTACTTTGCTGGACCCAAACGTTCACAAAGCTACCCCAATCACAATGTAGAGGATCAGGCAGACTCTGAGGAACCTCAGTTTACTGGGACAAGCAGAAGTACCCGGACCTTTGGAGCAGCAACCTCTAAATCCTTGGACTCCAGTCCAGTAAATGCCAAGCTTCAAGAGCAAGTAAAAGCTTCTACATTCACAGAGTCTGTGCAGGTTTCTTCAAAAGAGTACACATCCACAAAAAATGCCCCAGAAACCTCTTCACCCACAAAAAGTCCTAATGCTACAAATGCTATTCGTCCACCCATAGCAAAGAAACCAGACATGCACAGTCCAGGTGTTCTGCCCGAACCGAACCAGGTTAGCATATTTGGGCCGGTGAAGAAGTTTAAGCCCGTGATGCTGAAGTCCGTCGAGAAGGAGACATCTCTTCACAGTTCACTGATGGAGGCCATTCAGTCTGGAGAGGGAGCTGAACGTCTCAAAAAGGTATCTGGGACTTCTTTGACAGCTACCACGAAGAAGCCATCCTTTGTGGAGACTGAGAATGAGCGTTCTGCACTTCTATCAGCCATCAGAGCTCAAAGTAACTCTACAAGACTGAAGAAGACTAAATCGGAGGCGGCTGCAGAACTGGAGCAGTTCAGGAAGGTAGAGGAGGACCAGTCCGCCCAGAAACACGTCCCTTGCCCAAGCTCTCCTGAGCCCCCTGCATTTATACCTCCTCCACCGCCTGTATTtgctcctccacctcctcctccaccaccctCAGCCCCGTCCAAGCCTGCGGTAGTGCTGCCTGCAGGTGGGAACCCAGAGCTGGCCAGAGAAGCACTGCTGGAGGCCATCCGcactggtgctggagctgaacgGCTTAGGAAGGTCCCGGCCTCAGTAAAAACCCTGCAAGTGAATGGGAGGCTGGGCATCATAAAGCCTTCATCATCATTTTCTCAAGAACACTAAGAAGCACTTCTGGTCAGCTTTTCTGTTTCAGAAATTCAAATAGCCAAATTTCACACTTTATCAAGTTAACTCTTTGAAGCTGATTATAGCTCTTGTGATTAGGGTTAAAGTTTTGTTAATAGTCATGCTGCTTTAAGTCGGtgccaatacttttttttagtttgctttcttttaagcaagattattttatgtatattttgctgtttaaatgtatgtatctGCTACATATATCACTCTTAATTAATCTATCTGCTTCCTTTTCATCTGCCAGTATTTTCCTGAAGAAttcacatgtatttattttctgtttcaaCTCACGGTTATAAGGTTCATGTTCATCttttgtgttttgggtcatttgGATCCATTTCTTTTAATTGACCTAATTTGACACTAATCAGACTCTGAGAAGTTCTTTTGATGTACGTTTTTGGTGAAAGGCATCATCATAGCCTTTTTATAGAGGATGAATGATATTTTCTGATTTATGTATAGACTACAGCATATCAGCAAACCGATCTTCTCAGACTTCAATTACTGTAGCAAACACTTACTGTCTAATACTTGATTATACATAGAGTTATTGAACAATGCTGTTCAATACCAGTTGAATCATTTTCATCATGCTGCTAAAAAGAATTAACTTTTGCTAAGACTTATGTTTGCcattttgggaaaaaaagagaaaagaaatcaAAAGCTACGACACATAGATTTGTTAATATATACACTAAGTTATAAACCCTCTGATCATTTGTTCAGTTTAATGGACTGTATGACAGAACCTACAGAGGATCTAGACAGGTCCAGAGTTTTGATTTATCAgctgttcatatatatatttatatatgaatgTGATGGATAAAGGTATgagtggacttttttttttttgagcattgTAAATTTGGATAAAAATGGATGCCACGATATTGGtggaaagatttttttattttttgcttttttatgtaCAGTGCACAATATTTTTTGAAGGATTGCACAGCAATTGAAATCCCATTTTTAATCAATAAACTATTTTGTAATCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130368 lncRNA upstream 23962 3122855 ~ 3123407 (+) True G96761
TU130212 lncRNA upstream 39238 3107781 ~ 3108131 (+) True G96663
TU130187 lncRNA upstream 225195 2921469 ~ 2922174 (+) True G96651
TU130129 lncRNA upstream 561099 2518172 ~ 2586270 (+) True G96614
TU130124 lncRNA upstream 644076 2501157 ~ 2503293 (+) True G96609
TU130439 lncRNA downstream 160768 3433371 ~ 3438696 (+) False ddc
TU130524 lncRNA downstream 230235 3502838 ~ 3507691 (+) True G96861
TU130557 lncRNA downstream 260943 3533546 ~ 3582765 (+) True G96888
TU130590 lncRNA downstream 440915 3713518 ~ 3716401 (+) True G96912
TU130594 lncRNA downstream 455329 3727932 ~ 3728573 (+) True G96915
XM_022674035.1 mRNA upstream 140995 2736129 ~ 3006374 (+) True LOC103037869
XM_022674109.1 mRNA upstream 652301 2242170 ~ 2495068 (+) True LOC103036916
XM_022674108.1 mRNA upstream 979678 2151917 ~ 2167691 (+) True LOC103036307
XM_007256836.3 mRNA upstream 998631 2126283 ~ 2148738 (+) True ice1
XM_007232038.3 mRNA downstream 11424 3284027 ~ 3372686 (+) False grb10
XM_022674123.1 mRNA downstream 11424 3284027 ~ 3372686 (+) False grb10
XM_007232037.3 mRNA downstream 14375 3286978 ~ 3372686 (+) True grb10
XM_015600968.2 mRNA downstream 83186 3355789 ~ 3372686 (+) False grb10
XM_015600967.2 mRNA downstream 83790 3356393 ~ 3372686 (+) False grb10
XR_002650511.1 other upstream 2198784 943873 ~ 948585 (+) True LOC111193408
TU129495 other upstream 2338795 799236 ~ 808574 (+) True LOC103040575
XR_002650519.1 other downstream 592387 3864990 ~ 3882676 (+) False LOC111193421
TU131003 other downstream 1693097 4965700 ~ 4975504 (+) False ndufaf6
TU131004 other downstream 1693097 4965700 ~ 4975504 (+) False ndufaf6
TU131005 other downstream 1693097 4965700 ~ 4967968 (+) False ndufaf6
TU131002 other downstream 1695501 4968104 ~ 4975504 (+) False ndufaf6

Expression Profile