RNA id: XM_015600968.2


Basic Information

Item Value
RNA id XM_015600968.2
length 4869
RNA type mRNA
GC content 0.42
exon number 13
gene id grb10
representative False

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 3284027 ~ 3372686 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGAAGTTGTCTGCCAAGCTGGAAACCGTGCCATCTGCTCTCATCGGCTCTGTCCCGAACCAAAAAGCCAGGCAGAAGAGGGACAGAgtgaaaaaagagagtgagtgagagagacagagagagagagcagtggggagagagagggagagagagagagaagtgtggCAGGTATAGTTCAGTAAGCTACTTGACAGCCAAGCATCTGAGTGCTTGGacccgctttttttttttttttcctttccccaatttatttttgctttttcccCTCCTTTTCCTCTGTGGAGGAGTTGTGGAGAGCGGTGGAGAAGAGCTTGGGCTTGAGGCAGGCTGCCGGCGAACATGCCGTCGTTCTCTCCCGACTGGTGCCTGCTGAGGCCTGGGGAGATCATTAAAATCTTCAGCGAGGACGGCATGGGCAAAGTGGTGGAGATCCCAGCCGACATGACGGCGCGAGATCTGTGCCAGCTCCTTGTGTACAAAAGCCATTGTGTGGACGACAACAGTTGGGCGCTTGTGGAGCATCACCCAGTCATGGGGCTAGAGAGATGCTTAGAAGACCATGAACTTGTGGTGCAAGTGCAGGCTTCTATGACCAGCGAGAGCCGATTTCTCTTCAGGAAGAACTATGCCAAATATGAATTCTTTAGAAATCCTTTGAGCTTCTTCCCAGAGCAAATGGTGGCCTGGTGTCAGGAAAGCAACAGAACCATTCCCCCCTCTCAGTTGTTGCAGACGTTTTTAAACTCCAGCAGTTATCCTGAGGTCCAGGGGTACTTGTATGTGAAAGAGACAGGCAGGAAATCATGGAAGaagctgtatatgtttttgAGACGCTCAGGATTGTATTTCTCGACGAAAGGAACGTCAAAGGAACCAAGACATTTGCAGTTACTCGCAGACCACGAAGACAGCAATATCTTTAccgtaatatcaggcagaaagcTTCACAATGCACCAACGGAGTACGAGTTTTGTATAAAGcCCAACAAGGTACGGACTGAACAGAAGGAGTTGAGAATGTTGTGTGCGGAAGACGAACAGAGCAGAACATGCTGGATGACTGCATTCAGATTGTTCAAGTATGGAATTCTTCTTTATCAGAACTACAAAATCCCACAACCAAGAAAAGCTTTGATCTCACACTTCTCAACACCAGTGaggaGTGTATCAGAGAACTCTCTGGTTGCCATGGATTTCTCAGGGAGGATAGGCAGGGTCATCGACAATCCTGTGGAAGCTCAAAGTGCCGCATTAGAAGAGGGCCATGCCTGGAGGAAGAGAAGTCAACGCATGAACACTCTGGGAAGCCCCAGCCCACTACACCCCTCATCATTAAGTGGAGTAATACACGTAACTCAGCTTTGGTTTCACGGACGGATCACACGGGAAGAATCGCATAGGATAATCCATCAGCAAGGTCAAGTGGATGGATTGTTTCTCTTGAGGGACAGCCAGAGCAATCCTAAGGCTTTTGTTCTTACGCTGTGCCACCACCAGAAAATTAAACACTTTCAGATTTTACcgTGTGAAGAGGATGGTCAGATGTTCTTCAGCCTTGATGATGGCACCACCAAATTCACAGACCTGATCCAACTGGTGGAGTTCTACCAGCTCAACAGAGGAGTCCTGCCTTGCAAGCTTAAGCACCCCTGCACCATTGTGGCCTTATGACCTCTGAACTGGACTTTGGTTGAGAGAAGCCCTGTGCTCTCTGAGAATCGGACAATATTTCAGTGGTTAGTGCTGGGCAGAGCTGCGTAGAGACTGGTTGTCCTCAGACGAGTACACTGCAGGTGTTTTCTGTGCTTTAGAGAAGTCCACAAGTGCAAACAAGGCCATGGTGAAGCTCACATTTTGGTTGCCAACAAGCTTTCATCCACTGGTAAACTTGAGTGCTGTCTGTAGTCGCTATGGCATTCCTCTATCGTGCAGTTATCaagaggtctttttttttttttttaaaggtgcaCTTGTTTGAAGATCCTGTTTTGAGATAATCAAGAGGGCCATTGTTTTGGAAGATCTCCAAAAACTGTAGATGAGTCGTTCTAGTTTGCcagttttgattttgttttgtgttcatGAACAGGGAACAGCTAAGCTAAATCCATGTCATTTGAAACCCAAGCTCCTCTCTTTGTAAACACCCTTTATTGCACAGAGCTGGAATGACATATGTGGATGGCCCTCTGAGGCAAGCACAGTACTGTGAAAGAGGTCTTGATTTTCCCTTTCATGCACCCacctttctctatttttcttccTTCTCCAGTCAATTTTTTTCTGAACACTTTACCAGTtcccttctgcactttttttcctttttgattCCATGTCAGTACTGAGGTGGTTTGCCTCAACCAATGCCCCAAATCTTCAAATCACCCCTAGTTCCACAATGATACGTCATTTGAAGCGCCTCCTGTCAGTAACAGGAAACACCACCAGCCACTGAAATCACGGCACAAGTTACTCTACTGAAATCTACCTTACTGCCACTACCGAAAGAAAGGGCACCCTGATGGCCAAATGGAGTTTAATGGGGGTAAAAACACTAACTATATTCCTACATTACAACATGCTAACTGCAGGGAGCTCAGACAGCACGTAACAGAAATCGTCTTTTATGGGGAAATATCAAGACATAATTAGAGGAAAAATCACCTGAACTGCTGCCACTTCTAGATTTCTCAACAGTTCATTTGTCTTGCAAGTTCTTCTTTCCGTGTCTTGACAGATAGTCAGTAGATCAGTGCACTGTGAAGCCCAGCTGTGGAACCTGTCTGGTATAGTGGGGGTTCTGTTTTCTATTTTGCCTTGTTCAACAGTAGCAGCAAACAGACAGATTTGTAACTctattttttcatttgtaatGAGTACCTTACGAAAGAGCCATCTTTTTAGCATTTTGCCTATAATATATTAAGCTAGATAGAGAAGGCCTAGCCACCATGTCTACAAGCTCACCTGAGTGACCATTATTACACAgattaaatgcaaatgatgCAATCATTTTAAGTATTGTTTTCTTgagtctatttatttatctggaTTTGAATGATTACTTGAAATTTAGTGAATTTCTTAGCGCTGTTCAATACTGTTCTTCCATTTTCACAACCTTACTGAGccttttgtatgtttttcatttttatttaattgttttgggATAGACTAACCCTGCTTTCTTGAATCGTTTGTCATAACATTTCACCACTGTCTGCCACTGTCGGGATTGTGCTGCTCCCTTGGAATTTGTCTCTTGTTATATATGCGTAGAGTAGAGCAGTCTCAACCACCCTGACCATCGCAGTTCCTCTACTCAGCGATCTGTTTTATTCTCATGTTGTGTTGTTAAATCGGGAGAGTTCATCATGATGTATATGATGTCAGATGGCCTGAATATTCTAGAGTTAATGAGATTTAGTCATGATTAAATCAACACAACAGGGAGAGACTGACTGggagacagcagtgctgcacAGGAAGCATGCGAACAGTATAAGGCCTCTTTTCAGTGCTGATTGTGGATGGTCAGCAGCTGTCTTGGTGCATTATAACCATGGCATGTTGCTTCAGGCAAAAAAAGAATTCACAAAGACAGGCATTTTTAATGTGATTCCCTTATTAGCACTTTGTTTGTAAGAGACACTACATAATCACAGTGATTAATAAACACTCAGCCTGCATCCAAGTACCAGAACTGAACTAAACTCTAGCATTACTCCTAAAACACCACAGCTTTGTGGAAGATGTTCCTTACGTCGGCATCCAAGTATTTGTTTACGTTAGTCGTCAGTGGTCAGTTTCTTAGTGCTTACATCTCCAGGCACTGGTTTAACCTGAACATGGAACAAAGTTGTGGTTTTCTGGTTAAACAATGAACACAGCTCCCAGAGGCCAATGATCAGATCAGCACATCAGGTATAAAACAGGCTCCCAAAACAATATAGTTTAAAGATGAACTGTCATCTTTGACAAAATTGTGCTTTCGCCATCATTTAAATCAGCTTTTCTCCACACTGTGGCAACATTTCATAACAAAcagaccaacagaaatgctccaaaatcacttgaaataaaataataataatatgtttataCAAAGGCTTGACCCTTctcctgttaaaaaaatatcaaaaacttAATTGCTAATTATGTTGGACATTCATTAAAGATATGTAACTAAACTGTGCCATAGCTGTTTTCGTTCCCAGAGCCTTCAGTTCTGTGTTCAGAGTTAAAGTAGTTCAGTTTAGGCTAAATTCATGCTGATATCCTCATTTGTTACACCCTTTGCTTTGTtctgtacaatacaatacagtaatAATCAAACACACATGGCTAAATAAGACCAGAAATACTTTATAGAAACAACACTGTATTTTAGGTTTCCGAACACTATGTTCTacatttactttctttctttttttctttcacaatGGCATACAAAATGAAGAAACTTgactttatgcttttttttttgtttagtttttttgttggtaaaaatgtaaatattgtgtttattttatgttttttgtcatGTTAAATGACCTTAAAGAATGCTTTGTGTTTAAATTAAGCTGGTACAAAACTGGAGTCTGAGGAGTAAGTCTTGTGGTCAGAAGTCAATATTAAGCTAAATCATTGTCACTGAATACACTTAATGATGAAAATGCTAACGATCGTAGCCCTCGTGGGATCCTCATagtattttcttgtttttacagACGAGAAGCTACACTTTAAAGTCTTTGCATATACAGTTATGTTCAGATGAGCTGGTAACATGAATCGATTTACGACATGTGTGAACTGTTTTGAGagttatatcagtaaatgaaataaatgtcaatttttatatttaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130368 lncRNA upstream 232382 3122855 ~ 3123407 (+) True G96761
TU130212 lncRNA upstream 247658 3107781 ~ 3108131 (+) True G96663
TU130187 lncRNA upstream 433615 2921469 ~ 2922174 (+) True G96651
TU130129 lncRNA upstream 769519 2518172 ~ 2586270 (+) True G96614
TU130124 lncRNA upstream 852496 2501157 ~ 2503293 (+) True G96609
TU130439 lncRNA downstream 60685 3433371 ~ 3438696 (+) False ddc
TU130524 lncRNA downstream 130152 3502838 ~ 3507691 (+) True G96861
TU130557 lncRNA downstream 160860 3533546 ~ 3582765 (+) True G96888
TU130590 lncRNA downstream 340832 3713518 ~ 3716401 (+) True G96912
TU130594 lncRNA downstream 355246 3727932 ~ 3728573 (+) True G96915
XM_022674115.1 mRNA upstream 83186 3147369 ~ 3272603 (+) False cobl
XM_022674128.1 mRNA downstream 16365 3389051 ~ 3438726 (+) True ddc
XM_007232049.3 mRNA downstream 281114 3653800 ~ 3741264 (+) True LOC103035455
XM_007232055.3 mRNA downstream 281114 3653800 ~ 3741264 (+) False LOC103035455
XM_007232054.3 mRNA downstream 281114 3653800 ~ 3741264 (+) False LOC103035455
XM_007232050.3 mRNA downstream 281114 3653800 ~ 3741264 (+) False LOC103035455
XR_002650511.1 other upstream 2407204 943873 ~ 948585 (+) True LOC111193408
TU129495 other upstream 2547215 799236 ~ 808574 (+) True LOC103040575
XR_002650519.1 other downstream 492304 3864990 ~ 3882676 (+) False LOC111193421
TU131003 other downstream 1593014 4965700 ~ 4975504 (+) False ndufaf6
TU131004 other downstream 1593014 4965700 ~ 4975504 (+) False ndufaf6
TU131005 other downstream 1593014 4965700 ~ 4967968 (+) False ndufaf6
TU131002 other downstream 1595418 4968104 ~ 4975504 (+) False ndufaf6

Expression Profile