RNA id: XM_007232054.3


Basic Information

Item Value
RNA id XM_007232054.3
length 2467
RNA type mRNA
GC content 0.56
exon number 15
gene id LOC103035455
representative False

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 3653800 ~ 3741264 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttctctttcttaaGTAGTTTTTGATGGTGAAGAATGGAGACGGTGATAGAAAAAGAGTGCAGTGCCCTCGGAGGGCTCTTTCAAACAATCATCGCTGACATGAAGAGCAGTTATCCAATCTGGGAAGACTTTGTCAGCAAAGCGGGGAAGTTACAGTCTCAGCTTAGgACGACAGTGGTGGCTGTGGCTGCTTTCCTGGACGCCTTTCAGAAAGTGGCAGACCTGGCCACAAGCACGCGAGgtgGCACCAGAGACATTGGCTCCGCGCTCACCAGAATGTGCATGAGACACAGAAGCATCGAGGCCAAGCTGCGGCAGTTTTCAATGGCGTTCATCGATTGCATGATCAATCCTCTGCAAGAGCAGCTGGAGGACTGGAAGAGAGGAGCCAACTCCCTGGACAAGGACCATGCGAAAGAATACAAGAGGGCCAGACAAGAGATCAAGAAGAAGTCCTCAGACACCCTGAAGCTGCAGAAGAAAGCGAAGAAAGCTGATGCCCTGGGGCGAGGGGACATCCAGCCGCAGTTGGACAGTGCTGTACAGGACGTGAATGATAAATACCTGCTCCTGGAAGAGACTGAAAAGCAGGCAGTACGAAAAGCCCTGATTGAGGAGAGAGCGCGCTTCTGCACCTTCGTTACAATGCTCAGACCTGTGGTGGATGAGGAGATGTCCATGCTTGGAGAGATCATCCATCTGCAGACCATTGCAGATGACCTCAAAGCTCTGACCATGGACCCCCACAAACTTCCTGCTGCAAGTGAACAGGTCATCCACGATCTAAAGGGTTCGGATTATAGCTGGTCTTACCAAACCCCTCCCTCCTCTCCAAGCACCACTATGTCTAGGAAGTCCAGTATGTGCAGCAGTctgaacagtgtgaacagtagTGACTCGCGCTCCAGTGGCTCGCACTCTCACTCCCCTTCCCCACACTATCGCTACCGCAGCTCCACCCTGCCGCAGCAGGCCCCCGTCCGGCTCGCCAGCGTCTCCTCCCATGACTCTGGCTTCGTGTCACATGACGCCTTCCAGTCCAAGTCGCCTTCGCCCATGCCCTCCGACTCCACCCCTCAGTTGTCTAATGGCTATGACCACTATGGGCTTGGAGAGTCTGCTTACCTGTCCAGTGGGGTCTGTGGAGGGTCATACCCCTTCCTTCCCCCTCCttcctcctccatctcctcctcatcctcctcctcttcatccacTCTGAGGTCATGGTCGAGGCCAGGCTCCGCCCACCTTCCCGATTACCCCCATTTCTGCACACTGGGCCCTGGCATGCTCCCCCCCTCCTCAAAGATACCCAGTTGGAAGGACTGGGCTAAGCCGGGACCGTATGATCAGCCCATGGTGAACACACTGAGGAGGAAAAAGGAGCCAAAGGAGGCTGTAGATTCAAACGGTTCTGTGCCCACGCTTCAGCCGAGTACAGCCGCCGCTCTCCCTGAGGACAGCCAGAAGACCAGGAGCATGGCTGCCACACCAAAGGGTGAGGATATGGAGGCCCGTGAAGAGCTGGCTCTGGCCCTGTCTCGTGGACTGCAGTTGGACACTCAGCGGTCCAGCAGGGACTCGCTCCAGTGCTCCAGTGGCTACAGCACACAGACCACTACACCCTGCTGTTCTGAGGACACCATTCCTTCTCAggTGTCCGACTACGACTACTTCTCGGTAAGCGGTGAGCACGAGGCAGACCAGCAGGACTTCGACAAATCCTCCACCATCCCACGCAACAGCGACATCAGCCAGTCCTACCGCAAGCTGTTCCAGGCAAAGCGCCCCGCCTCTACAGCAGGCCTCCCGTCTACACCCGGACCGGTCATCGTCACACCCGGGGTGGCCACCATCCGCCGAACCCCTTCCACCAAACCCTCAGCCCGCAGAGCGACAGGTGGCACCGGTCCCATCCCAATCAGAACACCTATGATTCCGGTAATGACCCCCACTGTGCCTGATCTTTCTGGGAGCTTCCCTCTTCCCAGCAGTGAAGAAGCAGAGGAGCCGGCCAGCCCGGGCTCTCCTATGATGGGAGAGGATGGGGAGCAGGAGGGCATCCTGCCTGTGGCCTCCTGGAGCGGTCAGGCCTCTACTAACCCTCCTCTGCCTCCAGGGCAGCAGATCACTGCAGCTGGTATTATGGAGGGGCCTGAGGGAATGCTAGAGGAGATGGATCTGGTGGACCAGCAGGGAGACACCATGCTCTTGGCTATCAAGCGTGGAGTTAGGCTGAAGAAGACCATGACCAACGACCGCTCTGCACCACGCATTGCATAGAAGGAAGGGCTATTCCGAGACTTTACTGAGGGCTATTTAGATTTGTTAAGACGTCATAAAGCCTCGATAGGGTTGAAGCTTGACCCGTAACCTGTAAGCTTCTATTCCAGTGGAGAGATTTGGACTCCCAGTTGGATTGTGCTAGGAagcactgataaaaaaaaaaagtatggatGGACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130557 lncRNA upstream 71035 3533546 ~ 3582765 (+) True G96888
TU130524 lncRNA upstream 146109 3502838 ~ 3507691 (+) True G96861
TU130439 lncRNA upstream 215104 3433371 ~ 3438696 (+) False ddc
TU130368 lncRNA upstream 530393 3122855 ~ 3123407 (+) True G96761
TU130212 lncRNA upstream 545669 3107781 ~ 3108131 (+) True G96663
XR_002650518.1 lncRNA downstream 10228 3751492 ~ 3752697 (+) True LOC111193420
XR_002650517.1 lncRNA downstream 11908 3753172 ~ 3754770 (+) True LOC111193419
TU130602 lncRNA downstream 125642 3866906 ~ 3867199 (+) False LOC111193421
TU130516 lncRNA downstream 138434 3879698 ~ 3898919 (+) True LOC111193421
TU130703 lncRNA downstream 191547 3932811 ~ 4195776 (+) True G97000
XM_022674128.1 mRNA upstream 215074 3389051 ~ 3438726 (+) True ddc
XM_022674123.1 mRNA upstream 281114 3284027 ~ 3372686 (+) False grb10
XM_022674134.1 mRNA downstream 18681 3759945 ~ 3859872 (+) True LOC103037205
XM_007232061.3 mRNA downstream 160425 3901689 ~ 3915719 (+) True e2f3
XM_007232062.3 mRNA downstream 163653 3904917 ~ 3915719 (+) False e2f3
XM_022674053.1 mRNA downstream 182397 3923661 ~ 3925572 (+) True LOC103038805
XM_007228887.3 mRNA downstream 420610 4161874 ~ 4164337 (+) True tmem158
XR_002650511.1 other upstream 2705215 943873 ~ 948585 (+) True LOC111193408
TU129495 other upstream 2845226 799236 ~ 808574 (+) True LOC103040575
XR_002650519.1 other downstream 123726 3864990 ~ 3882676 (+) False LOC111193421
TU131003 other downstream 1224436 4965700 ~ 4975504 (+) False ndufaf6
TU131004 other downstream 1224436 4965700 ~ 4975504 (+) False ndufaf6
TU131005 other downstream 1224436 4965700 ~ 4967968 (+) False ndufaf6
TU131002 other downstream 1226840 4968104 ~ 4975504 (+) False ndufaf6

Expression Profile