RNA id: XM_007232937.3



Basic Information


Item Value
RNA id XM_007232937.3
length 1466
RNA type mRNA
GC content 0.47
exon number 9
gene id il4r
representative True

Chromosome Information


Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 812108 ~ 827863 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CAGGCAGAATGAAAGCCAACTAAACTGAGCTGGTCTTGAACTCCTTATTACTCTCTACATTACGATACATACAGCAAGATTTTCAGAAGATGAATCTGTTTTAACAGAGAAAGAAGAtgagttttgttttttgctttctcgCATTCGTCTGTTTTTCACACGTCTGTGGAAATCTGATGTCTCTAGgaggaaactacagtctgcagtgtttaAATGATTATCTCTTCACTATCTCCTGTGAGCTGAATGTGTCCTCTGATCTGTTGGAGCACGGCGCCACCTCCTGGCTGGAGTTCTACGACCTCAGGGACCCGTTCAGGTGTATGTTAAGGGCGCGCGCGCGCTCGCGGGTGTGTGAGCTGGACCTGTCCGTGCTGATGATCGAGGACACCTTCACCGATACTGACTTCTTCCAGATCTCCCTCAACTCCAGTTACCATGGCAACAGCAGCTCGGCAGTGCTGGACACGGACTATAGACCCTTTAAACACAtTCGTCCTGTTACTCCCTCAAATCTGACATTGCTGTGGAAAGAAGATGGGgctgtttttcattggctcagtGGATACGAGAAAAACACCTCATTTGTACAAAGCCTCCAGTACCAGTTCAACATACAAAATAACAACCGGGTCCACAATGTCCATCCAGTCCAAACACGAGTGGTTGTGGCAGTGTCGGAATTTCTGCCTCACACAGAGTACATGGCCCGTGTGCGCTCACAGCCAAATCAGCTTCATTACGTAGGTGTTTGGAGCCACTGGGGGCCTGCCATTCATTGGACCACTGGGGCCATACACAaaggAGACACACAGGACACAACTTTCCCTGGTATTTGGTTTGCTCTGTTCTGTCTGCTGCCATTACTAGTCCTTCTGTTATCGTACCTCCCATACTCCAGGTGGAAGAAGCGTTTATTGATCCCAAGTCCAGCTCCATATATCAGAGATTTGAAAagCTGTGCAGTGCTGCCAGGGATTGTGGCTGAGCTGCTACAGAGGGAGGAGTCTCTAAAGATTGAGAGTATGATTGAATATTCAGACCACGCCTCTCCATGCAGCCCTGCTGGCTACGAGAAGATGAAAAGTGTTGGTGATTGCTCTGAGCCCACCTTCATCACACCTTCAGGACCACCTGCATCTCACATCATGCTCTACTCACCTGCAGGGGCGGAGCTCGGCTCCGAAAGCTGGCTGAAGGATTTCACCACAGTGGAGAGGGGGAGTGTAACATGCAGCGAGGATTACTGCACTCTCTCTCCCACAGACACAGAGAATTCCAcataggggtgggtgatataattaaaaataattttgaagcTGATTATGTTAAAGTGATGATAATTGATTTATTCTTAATCTGGCAGATAACTGTTGCTTTAGTAGCTTTCggagtacagtaccagtcaaaaatttggacacatcttcaaTCTTCAATcatcttttttcattattatttgtttatta

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU129602 lncRNA downstream 3583 755884 ~ 808525 (-) False G96205
TU129601 lncRNA downstream 3583 799174 ~ 808525 (-) True G96205
TU129596 lncRNA downstream 35635 770086 ~ 776473 (-) True G96202
TU129600 lncRNA downstream 51600 753008 ~ 760508 (-) True G96204
TU129562 lncRNA downstream 88630 637382 ~ 723478 (-) False G96171
TU129622 lncRNA upstream 7665 835528 ~ 836117 (-) True G96213
TU129673 lncRNA upstream 396301 1224164 ~ 1226850 (-) True G96257
TU129783 lncRNA upstream 449880 1277743 ~ 1281993 (-) True G96355
TU129790 lncRNA upstream 460180 1288043 ~ 1291525 (-) True G96358
TU129850 lncRNA upstream 606392 1434255 ~ 1486728 (-) False G96407
XM_007232941.3 mRNA downstream 68378 736736 ~ 743730 (-) True gnptg
XM_007232944.3 mRNA downstream 100997 698723 ~ 711111 (-) True dnaaf3
XM_022674052.1 mRNA downstream 235552 575511 ~ 576556 (-) True LOC111193396
XM_007232952.3 mRNA downstream 238818 551438 ~ 573290 (-) True LOC103037419
XM_007232953.3 mRNA downstream 267089 536446 ~ 545019 (-) True dcakd
XM_007232935.2 mRNA upstream 51031 878894 ~ 969646 (-) False LOC103030489
XM_022674073.1 mRNA upstream 51031 878894 ~ 969646 (-) False LOC103030489
XM_022674074.1 mRNA upstream 51031 878894 ~ 969646 (-) False LOC103030489
XM_007232932.2 mRNA upstream 51031 878894 ~ 969646 (-) False LOC103030489
XM_007232927.2 mRNA upstream 51031 878894 ~ 969646 (-) False LOC103030489
XR_002650509.1 other downstream 379715 431659 ~ 432393 (-) True LOC111193405
XR_002650507.1 other downstream 380442 431162 ~ 431666 (-) True LOC111193404
TU129322 other downstream 546524 252924 ~ 265584 (-) False LOC103043490
TU129943 other upstream 983975 1811838 ~ 1814918 (-) False LOC103031019
XR_002650512.1 other upstream 1442640 2270503 ~ 2271577 (-) True LOC111193410
XR_001518422.2 other upstream 3322140 4150003 ~ 4174207 (-) False LOC107197182
trnas-aga_10 other upstream 4265023 5092886 ~ 5092967 (-) True trnas-aga_10
TU131662 other upstream 4750699 5578562 ~ 5586666 (-) True G97717

Expression Profile


XM_007232937.3 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
End of interactive chart.

XM_007232937.3 Expression in each Bioproject

Bar chart with 7 bars.
XM_007232937.3 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.