RNA id: XM_007232941.3



Basic Information


Item Value
RNA id XM_007232941.3
length 1151
RNA type mRNA
GC content 0.48
exon number 10
gene id gnptg
representative True

Chromosome Information


Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 736736 ~ 743730 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CTTCTGCAGAGTCATGTGATCAGGGGCGGCATCATGGCGACGGTCTCGGATAAACACAAGGAAACAGTATAACGTTTTTGCTCATTTCTGCAGCAGATTTTAGAGTTTTGAGGTCATGTCGTGCATATTTGCTTCTCGATATCTGCCATGGCTGACGTTACTGGTGTCGCTTGTGTCTGGTGGGAAGATGAAGATTGTAGAGGAACCAAATACATTCGGGTTGAACAGCCACCTTCTGGCTCAGGGCAGCCGGCTGCAGGCCAGGGTCAAACCATCTCCAGTGTCTGGACCTCCTCATCTGGCCAGACTGGCCGGGAAATGTTTCAGCTACATCGAGTCCACGTATAAGTATGAGTTCTGTCCATTCCATAACGTGACACAGCATGAGCAGAGCTTCAGGTGGAACGCTTACAGTGGAATTTTGGgCATCTGGCATGAGTGGGAGATCCACAACAACACGTTCTCTGTGATGTGGATGAGAGAGGGAGACTCCTGTGGGAACAAGAACAGACAGACcaaggtccTCTTTACTTGTGGGAACAGCAGTAAACTGGCAAGAGTGTCGGAACCACAGACATGTGTGTACTCGTTCACGTTTGAGACGCCACTAGTCTGTCACAAACATTCCCTCCTGGTGTACCCTGTGCTGAGTGAAAAACTGCAGAAGGAGTGGGATGAGATTGAGCAGGCCCGGTATGATGAACTCATAACTGAACAGGGCTACAAAAAGATGCTGAAGGACCTGTTTGAAGAAGCTGGCTTTCTGAAGAAAGTTCAGGCACAGACACaagaagaaaacacacacactccacgaCACCAAAGCCTGGAGCAGTGCACACAGGACTTTGACAAACAGCATGCTGAAATTGAGCGGCTGCGCTCTCTGCTCACCCAGCACAACATTTCATATGAAGCAGAGCCTGGCCGGCCAGAAACCCCATTGACCCCACGACCACTGACCTCTCGGCCCTCAGTGCTGCAGGACCAGCATCTTCGTGGCGACACTGGAATCGTTGCAGACGTTTAGCAAGATGCTGAACAGTGACTTCTTACATCCCAATCGAAAGAAAATGactttattttggttttatttcagattttaagttatggtaattttgtttttattaaataaaagtgcTGGCATGCTGgta

Function


GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG:

id description
K10087 GNPTG, GNPTAG; N-acetylglucosamine-1-phosphate transferase, gamma subunit

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU129562 lncRNA downstream 13258 637382 ~ 723478 (-) False G96171
TU129560 lncRNA downstream 51843 680954 ~ 684893 (-) True G96171
TU129438 lncRNA downstream 157577 578492 ~ 579159 (-) True G96081
TU129405 lncRNA downstream 208975 527434 ~ 527761 (-) True G96058
TU129404 lncRNA downstream 209975 526407 ~ 526761 (-) True G96057
TU129600 lncRNA upstream 9278 753008 ~ 760508 (-) True G96204
TU129602 lncRNA upstream 12154 755884 ~ 808525 (-) False G96205
TU129596 lncRNA upstream 26356 770086 ~ 776473 (-) True G96202
TU129601 lncRNA upstream 55444 799174 ~ 808525 (-) True G96205
TU129622 lncRNA upstream 91798 835528 ~ 836117 (-) True G96213
XM_007232944.3 mRNA downstream 25625 698723 ~ 711111 (-) True dnaaf3
XM_022674052.1 mRNA downstream 160180 575511 ~ 576556 (-) True LOC111193396
XM_007232952.3 mRNA downstream 163446 551438 ~ 573290 (-) True LOC103037419
XM_007232953.3 mRNA downstream 191717 536446 ~ 545019 (-) True dcakd
XM_007232954.3 mRNA downstream 191971 536446 ~ 544765 (-) False dcakd
XM_007232937.3 mRNA upstream 68378 812108 ~ 827863 (-) True il4r
XM_007232935.2 mRNA upstream 135164 878894 ~ 969646 (-) False LOC103030489
XM_022674073.1 mRNA upstream 135164 878894 ~ 969646 (-) False LOC103030489
XM_022674074.1 mRNA upstream 135164 878894 ~ 969646 (-) False LOC103030489
XM_007232932.2 mRNA upstream 135164 878894 ~ 969646 (-) False LOC103030489
XR_002650509.1 other downstream 304343 431659 ~ 432393 (-) True LOC111193405
XR_002650507.1 other downstream 305070 431162 ~ 431666 (-) True LOC111193404
TU129322 other downstream 471152 252924 ~ 265584 (-) False LOC103043490
TU129943 other upstream 1068108 1811838 ~ 1814918 (-) False LOC103031019
XR_002650512.1 other upstream 1526773 2270503 ~ 2271577 (-) True LOC111193410
XR_001518422.2 other upstream 3406273 4150003 ~ 4174207 (-) False LOC107197182
trnas-aga_10 other upstream 4349156 5092886 ~ 5092967 (-) True trnas-aga_10
TU131662 other upstream 4834832 5578562 ~ 5586666 (-) True G97717

Expression Profile


XM_007232941.3 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 300.
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XM_007232941.3 Expression in each Bioproject

Bar chart with 7 bars.
XM_007232941.3 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3000.
End of interactive chart.