RNA id: XM_007232945.2


Basic Information

Item Value
RNA id XM_007232945.2
length 1478
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC103035662
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 685850 ~ 698734 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgtttttcataggacaacGACGATATGTAGTCTGgtcatttaataaacaaaatatgtatACTGCTGTGATAATGTTAAAACATCATCTCTTTACCCATTCCCCACatatttcctttttcttttctttttttgtgggaccctttaacttaaatataacaTAAGAGTAGCAGGACTAGATCCTGCATAGTTGGCCTCTTTCCAACTAGTATATGGGGTATAAAGCTACATTCACCTGTCAATCACCACACACACGACTCTGCCCCACTGTGAGGGACTTTTTAATGTCTGTTGTGGCGTCTCAGTCGTTCATGATTGGCAGAAGCTCCACGTTTGCCCCGAGTGGATGGTGTTAGGATGTAATTATCATCCGTGCTCATCTGTCTGTCATCCATTACAAAGATTTCTCCCACAAAATCCCTGTAATCCACACAGTCCGCCCTGTCCATCACACACCCAGTCCTCCCTGTCCGTCACTGAAGAGTTCCTCTACAGTATAAACCAGAGACCAGCGCTCCATCAGTTTATTCTTCACTCACTTCTGAGGTTCATACACTGGTACATCCTGAAGACTGTGAAAGTGCCTGCCTTTTCCATCATGTCTGACATTGAGGAGGAGCATGAGGAACAGGCTGGAGGCTTTGAAGAAGAACGGCCAAAATACAAgccAATGCACTCTCAACTGGCTCCTAAAATCCCAGAAGGGGAACGAGTGGACTTTGATGACATCCACAGGAAGCGGATGGAGAAAGATCTACTAGAGCTGCAAACCCTGATTGAAGTTCACTTTGaccagaggaagagagaagaggaagaactGATCGCTCTGAAAGAGAGAATTGAGAATCGCAGGGCTGAGAGAGCCGAGCAGCAGAGGGTCCgagctgagaaagagagagacagacagaccaggATTGCGGAGGAGCGTCAGAGAAAGGAGGATGAAGAGGCGAAGAAGCGAGCTGAAGATGAggcaaagaagaagaaagttCTGTCTAATATGGGAGCACATTTTGGAGGCTTTCTAGCTAAGGTAGAGCAGAGGAGAGGAAAGAGACAAACAGGGAGGGAAATAAAAAGGAAGACTCTGGCAGAAAGACGCAAACCACTCGCTATTGACAACCTGAGAGAGGATGGACTGAGagagcGTGCTCGAGAGATGTCGGAGTGGATCTACGAGTTGGAGTCTGAGAAGTTTGACCTGATGGAGAAGATGAGGAGGCAGAAATATGAGATTAAAGTTCTTCTGAATCGCATCTCTCACGCTCAGAAATTtaagaaaGGCACGGGTGGCAAAGGAAAGGTTGGAGGTCGTTGGAAATGAATAaacaccaatatatatataagatttcaccactaaaatatacaatatttcacCAGTATTTAGTGGCTAATTGCACATAAGaagtaataaatattaatagtgGTTTGCtaactgtataataattattgcacactaaAACATGTCCATTTAACCAAA

Function

GO: NA

KEGG:

id description
K10372 TNNT1; troponin T, slow skeletal muscle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129424 lncRNA upstream 100867 585905 ~ 586112 (+) True G96073
TU129412 lncRNA upstream 108148 578494 ~ 578831 (+) True G96061
XR_002650510.1 lncRNA upstream 153910 531857 ~ 533069 (+) True LOC111193406
TU129360 lncRNA upstream 156014 530684 ~ 530965 (+) True G96021
TU129359 lncRNA upstream 159231 527430 ~ 527748 (+) True G96020
TU129490 lncRNA downstream 38007 736741 ~ 743739 (+) True G96116
TU129500 lncRNA downstream 110587 809321 ~ 809530 (+) True G96124
TU129515 lncRNA downstream 136748 835482 ~ 836102 (+) True G96132
TU129703 lncRNA downstream 642827 1341561 ~ 1391532 (+) True G96281
TU129704 lncRNA downstream 645303 1344037 ~ 1344448 (+) True G96282
XM_007232946.3 mRNA upstream 4674 652624 ~ 682305 (+) True LOC103035972
XM_022674061.1 mRNA upstream 50549 596986 ~ 636430 (+) True crhr1
XM_007232950.3 mRNA upstream 50549 607915 ~ 636430 (+) False crhr1
XM_007232955.3 mRNA upstream 191596 481159 ~ 495383 (+) True LOC103038500
XM_007232958.3 mRNA upstream 226797 449751 ~ 460182 (+) True LOC103039326
XM_007232943.3 mRNA downstream 16508 715242 ~ 731435 (+) True LOC103035039
XM_007232940.3 mRNA downstream 45651 744385 ~ 750365 (+) True tsr3
XM_022674063.1 mRNA downstream 54351 753085 ~ 776488 (+) False LOC103033547
XM_022674064.1 mRNA downstream 54685 753419 ~ 776488 (+) True LOC103033547
XM_022674065.1 mRNA downstream 79095 777829 ~ 795543 (+) True LOC111193407
TU129495 other downstream 100502 799236 ~ 808574 (+) True LOC103040575
XR_002650511.1 other downstream 245139 943873 ~ 948585 (+) True LOC111193408
XR_002650519.1 other downstream 3166256 3864990 ~ 3882676 (+) False LOC111193421
TU131003 other downstream 4266966 4965700 ~ 4975504 (+) False ndufaf6
TU131004 other downstream 4266966 4965700 ~ 4975504 (+) False ndufaf6

Expression Profile