RNA id: XM_007232952.3



Basic Information


Item Value
RNA id XM_007232952.3
length 3764
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC103037419
representative True

Chromosome Information


Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 551438 ~ 573290 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CGGAATACAGGTGGGGGATAAAAAAACGTAGCAGCATCCctaagaggaggaggaggaggaggatgtgGATGATGCATCTGATAGGCGAGACCCTCTCAGCGACCATCtgtaccaataaaaaaacatggaagaATAGACATGGCTGGTGAGGTGGAGAGGGAGATGTAGCTTTGAGGATGCCATCCCTGCACGTTTCCCACTTGCTGCTGTGCTTCCTCCTCTTTTCCTGCGTTGGATGGAGTGAGAGCAAATCCCTCGCGGAGAATGGAGCCCACGAGGTGCAGGTGAGGGTTCAGGTGTTTGATGGCGGTGACCTGTCACCGCTGTCCAAAGCTGCCATTGTGGTCCATGGCAATCAGAGCGTGCTGGCATCCAGCCAGGCAGAGAATGACGATGCAGTGGTCGTAAAATTCCTGTACCGCACAGGCACGTGGGTCATCATCACAGCATCTCAGAGAGATTATGTCACCAGCTCAGTGCCCTGGCATGCCAGCAGAGTGCCCTtGTATGCCTCTGTCAGTCTGTACCTGCTGGCACAACGGCCAGGAACACTCATCCTGTATGATGATGTCATCCAGGTGTTTCATGGCTCTCCGGGTGGGCGGAGCCAGCCATGGCTACATATTCCAAGGCGGAGCTTACAGTTGAACTCCTCCTTTTCTGAGTTGACTGCAGTCTTGACCACTGCCAGGGATTTTAGTGAGATCAATGCCTTTCCCTACCTCCTAGCCCTGGAGCCTAACAACACAGgTGGTGAAAGCAGCTGGACTGATCTAACAGCAGTAGCAGCGGTCAGTGCTCAGCTCTTTGACCGTGAGGGCAATGCGGTTCAGGTTACTGAGCACATTCATGTTTCTGTTCCTCTGCCCTCTGACACACGGTTCCGATCACCCACCAGCGTGCCTGTGTGGGTGTATGACACTAagacagGCCTGTGGGTGAGGAATGGGACAGGCTACATTAAGAGAGATGGAGCTCATCTCACATTGGACTTCATGGCCTCACGGCTTGGCTATTGGATTGCAGCCTTCCCCTCTTCATCAGGGCCAGGTTTGTCTCATCCAGGCCTGAGGGATATTACAGCCTACCATACTCTTTTCCTGCTGTCCATATTGGGATCTCTGGCTCTTCTTGTACTGGTATTGCTCTGCGTCCTCCTCTACTATTGCAGACGAAGATGTCTAAAGCCTCGGCGGCAGCAAAAGCAAGTCCAAGCCTCATCTGCTCTGAGTGGCGCTAAACGAGACCAAGGCACCTCAACGTCTCGTCTCAACCTCATCTGTGGTGGTCATGCTGAACCTGCTGCTTCCAATGGCGATCTGGATGCCAGTAAACCTGACGCTTCACCGTCTCGTGAATACAAAAGTGCAAGGGAAGAGTTCTCCAAACACGTACCGGCACACAAACTCCGGCATTCGTCCAAGAGCAAACAGTCAAAAGGTGCCCAGCGGGGAGGCGAAAGCTTTCCCATGAAGGTCCATCGTTCCACAGACACAGGCAACCATGACAGCACTCTTATTCATGATGAGTACGGGCGTAAGTACAGCTCAGATGACAAGGATCACGAGTACCGTCGCAGACATGTTGTCAATGACAATCGCGGATACACGGCGGACCCGCCTTCTCCAGCCATGCCAGACAAGCCCCCTGAGTACTCTCAGGTCTCCCAAGGCCCAGACCTCCTTGCTCGTCCAACATCACTCAACACACAACCCGGACAGATCATATTCTGCAGCTCTTTAGATCAAATGACAGAGAACATGTATCGCAGCATGGTCCCAACCTTGGTTATCCCAGCGCACTACATGCGCCTGTCGTCTGAGTTCAATGCCGCTGAAGGTGGGAAGGATGGCCAGAGCCAAGCTGATAGGGAGAACCAGGGAGGTGCGGGTAACGGTGTCAGCGGTGGACTCCAGAACCAAGGCTCAGGTCAGATGCAAGCCCAGCCAGGGGTGGGGTCGCCAGCTAGCTCTGAAGAGAACATGTGGGCGTCTGGAGGTCCGTCAGCCCCCGTCCACATCCCGGTGCTCTTTAATGACTCCACTATGGCTCAGATGAATGGAGAACTTCATGCACTTACCGAGAAGAAGCTTCGAGAACTTGGCGTGAAACAGCACCCTCGTGCCTGGTTCATATCACTGGATGGACGTGCCAACGCTCACGTGCGGCACTCCTACATTGACGTTGGCACCGAGCTTGGCCACAGTGGAGCAAACAGCAGCAACCACAGTGCTCAAAGCACCCTCAGCGCCCCTGCTGGCAGCAGCAAGGATTGCAGTCCAGATACAGGCCTTCAGGATATCCCACATGAGCGCAAATCAGCCTCTGCGCGGAAGAGTAAAGAGGACCGGCACGGGAGTGGACGCAAAGGGCATGGAGGGAACAGTGTCAGCGGCGGGAAGCAGTATTCAAAACTGCCTTACAATGACCCCCTGGATCTCAGCGGTGGGGTCGGCCGCATGGGGGCAGGGTCACCCCTGGAAAATCCACTCACTCCCCTCCTGGATGATGGTCCCGAAGAGCCACGAGGGTCGTCGATGCCTAGACGGGGTCGCAGCCGAGGAAACAGCTCACGTAGCAGCAACAGCGAGACACAGCGTGACTCTGTCACCAGCCCAGAGGACGACAATGACCCAGACGACAAAGATGAGAACAAGAAAAGCCCATGGCAGCGTATTGAGGAACGGCCACTCATGGTGTTCCATCCCAAGAAGTAAAATAACCTGTAGGTGAAGATGAGACTTAAACACATTTCTCAAAGCTGAAATCAGCTTGGGCTTTGAGTTTAGATATCACGCTGCTGGATAATGTTTAGCTGAAGTCCACAATAACAAGCAACAAGTTACAGCCTTTTTACAGTGGGTACAAGGAAAACATATGCAGAGAATAAGCACAAGATGTCTTACCGGTCCAGAAGAGGGGAATAGGAATCATCTGTTTACAATCAATTTTGGGGCATTTTCatcacaaaaatcacaaaattacATCTTAAACTGTCTTAGTTCCTTCCCAGTTCAATGATTTGTGATGATATGTTTTTGAATAGTACCATGTCCACCGAAAAGGCTGATCAGttttttgaaagactttttttgACTCGGATTCGAATCTGAAGGTGGCTTTGAGAGGTTTGAGAGACACGTTTATGAACTGTTACCTGAAAAGAAGGCCAGATTTTGCTATGACGAGGAGTTCCTTCAAAGGCATGGAAGTTGTGGATGGTCAGCAGTCAGATCCAGGCCACACTCTGACGTTCTTAATGCAGTATAtctgtaccaaaaaaaaaaaacacaaacattttttatttcagacaacCACTTTTCAACCATTTTTATATACATGTACGCAGCATCCCAATGCTAATAGATTACAGCATACAGTGTGCATCACTTTATTTATGCCTTTTgcattttgtttctgtttttcttgcCTGAACTGTGGTTCTTTGGCGGCaatagtttgttgtttttttcttcaacaGCAAGATGTTACAACATAAACAGTGAATATCAAATATAGTATAGAAATATTATTCTAAACATTCCATTTCAAACATTCCGAATTACAGCACTTAAGATAACAGACTAGGATTTATATGGGTTTGTAGATTGTTTATTTGATAATTGTATTGAACATctatattttgtgttatttttttaatggttgtGATTTAGTCATTCGGTCGTGGTTGAAGTCATCCCTCCTTTCTGACCTATGTCATGTTTTGCATTTCTTACATAAAGATGATTTCTTACTGAGCTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU129405 lncRNA downstream 23677 527434 ~ 527761 (-) True G96058
TU129404 lncRNA downstream 24677 526407 ~ 526761 (-) True G96057
TU129403 lncRNA downstream 25155 525949 ~ 526283 (-) True G96056
TU129386 lncRNA downstream 47910 444445 ~ 503528 (-) False G96040
TU129438 lncRNA upstream 5202 578492 ~ 579159 (-) True G96081
TU129562 lncRNA upstream 64092 637382 ~ 723478 (-) False G96171
TU129560 lncRNA upstream 107664 680954 ~ 684893 (-) True G96171
TU129600 lncRNA upstream 179718 753008 ~ 760508 (-) True G96204
TU129602 lncRNA upstream 182594 755884 ~ 808525 (-) False G96205
XM_007232953.3 mRNA downstream 6419 536446 ~ 545019 (-) True dcakd
XM_007232954.3 mRNA downstream 6673 536446 ~ 544765 (-) False dcakd
XM_007237272.3 mRNA downstream 175008 366617 ~ 376430 (-) True LOC103040905
XM_007237277.3 mRNA downstream 219291 301691 ~ 332147 (-) True LOC103042121
XM_007237278.3 mRNA downstream 308992 234312 ~ 242446 (-) True mrap2
XM_022674052.1 mRNA upstream 2221 575511 ~ 576556 (-) True LOC111193396
XM_007232944.3 mRNA upstream 125433 698723 ~ 711111 (-) True dnaaf3
XM_007232941.3 mRNA upstream 163446 736736 ~ 743730 (-) True gnptg
XM_007232937.3 mRNA upstream 238818 812108 ~ 827863 (-) True il4r
XM_007232935.2 mRNA upstream 305604 878894 ~ 969646 (-) False LOC103030489
XR_002650509.1 other downstream 119045 431659 ~ 432393 (-) True LOC111193405
XR_002650507.1 other downstream 119772 431162 ~ 431666 (-) True LOC111193404
TU129322 other downstream 285854 252924 ~ 265584 (-) False LOC103043490
TU129943 other upstream 1238548 1811838 ~ 1814918 (-) False LOC103031019
XR_002650512.1 other upstream 1697213 2270503 ~ 2271577 (-) True LOC111193410
XR_001518422.2 other upstream 3576713 4150003 ~ 4174207 (-) False LOC107197182
trnas-aga_10 other upstream 4519596 5092886 ~ 5092967 (-) True trnas-aga_10
TU131662 other upstream 5005272 5578562 ~ 5586666 (-) True G97717

Expression Profile


XM_007232952.3 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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XM_007232952.3 Expression in each Bioproject

Bar chart with 7 bars.
XM_007232952.3 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
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