RNA id: XM_007232958.3


Basic Information

Item Value
RNA id XM_007232958.3
length 4557
RNA type mRNA
GC content 0.38
exon number 3
gene id LOC103039326
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 449751 ~ 460182 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAACACTGTATAAACCGCCGGCTCTTAACTTCCTTTAACACGAGTCACGAGTCTGAAGGATGAGGTTCTGCAGAGGGTATGGAGAGAATTAATGTGAGCTGGACTGCTGTGATAGTACTCAGACATCTTACACATCAGAATAATCAATAAACATGGacaaataactttttattttgtagtaCTCCAgtttaatacacattaaaaacGGATTTGGATTCTACTGTTTGGTAGGGGCCACTCTTACTTCTACTTGAGGCATAATCACTAAATTTTAAgtgtcaagttttttttttatcactttccCCTCTTTTCTGGATATCATATATTGGATATAACGTTAAGACAGTTATGTTGGAGGCCATTTTCCGAACCCCTCCTCTCACAGCTTTAGGAGTTCTGCTGCTCCTAAGCTCGCTGCTGAACCTCTGTTCTGGAGATGTTGGGGATTTCTCGCCATGCTTGAACTACTTTCACCGGGCTTGGCCACTAAAAGGCCTACAGGGCACTCCAATCTGCCAGCGCTTCGATAACCGGTATCATTTCGCCACGCTGTACAGCCGAGACCGCCGCACGCCACTGTTCTCAGCCTACATCTACAACCCACCTCAGGGCAAGAGACCTAAAGGAAACTGGAAGTATGAACCTCAGCTGGCCAATTCCAAAGCCGATGGTAACATGGTACCATTCCCCATACCGCCGGCGAAAGTGGACCAGAACGtggtggagagccaggctgttCAGGAAGACTACATCAACTCCAGCTACACCCGCGGCCACCTGAACCCCAGCCAGCACCACACTGACCCCACTGACCGCTACGCCACCTTCACCCTCACCAACGTGGTCCCGCAAAAGGCCGGCTCCAACGACGGACCCTGGGCCAAATTGGAAAGTAGCGTCAGCCAGAGACTCCAGGCGTACTGTCTGGGGGAGGCACATGTGGTGACTGGGATCATCCCGTATGAGAAAGACCGATGGCTGAAGGATAAGGGCAGAGTCGCTATCCCAGAGTACCTGTGGTCGGCATACTGCTGCCAGAACTTCAGCCAGAACCTTCCGAAAAGCCTGATCGACACGTTTCCCTCATACGCAGCCATCGGACGGAATGATCCGAATAGCACTGAGGAGATTGTGCCGGTGAATCCAAAACGGAAAAAGGCTTTCCTGGGCTACGATGTCCGGCCTATGCCTCTCCCCACTCTGGAGACCTACCTGAAGCAGCGCTACGGAACACCCATCAGTGTCTTCTATGAACAGTGCTCAGGGTCGTGACCTTTGGACCGTATAAAGAATGTCTAAGGCAGGGCTGTTTGGAAGGCTGGTGAAATTGCAGGGTTTAATTGTAACTAAGAAGGATGAATAATGTGAATAATGTGAGTAATaatgtgaataataataatgaatcaaaaaaatattggaGCCTCATTGGGAGTAAAGTAACAAGGCCAAGCCATATGCTGGGTCTCATTTACACGCCTagttttaaatactgttttttttttttccggacTATACGGTGCACCTAAAATTCTTTAACTttaccaaaaattgtcagtgtgccttacaatccagtgtgccttatgtttgAATTCTACtccgctgctaactggggctggctagcactgctaactgcagctggctatgctgctaactgtggctagctcTCACCCTAGGACAAAATACTGGagttctaagcttactgtgaataaacggaagtgctttactcacctaaatgaatggttttcaggagagaattctgtctagattaacattcagcgctcatttgactttaaaagaaaatgttttttttttttttcaagaattacagttttgattaCCTAGGCATTTCCCCCAGCTTCACCATTAGAAGAGAAagatggcgacacccttgctcacttcaatataggcatccttactagcatcacttaatgcgccttataatctggtgcaccttgtgtatgaaaatagatcagaaaatagacattcattgatactGCGTTttttaatctggtgcactttataatccggtgcgttTTATATTGTGTAAAATGCAGTAGCACATTTTAAGTGGAATCCTACATGTGTGATTTTCTACTTGGGAAGTTGGGAGAATATTTCAACCCCCAGTTtggaatccaagatggctgccctgctcatcaacagtagtaaaagcagtgttattttacagtttattagcactttTTGTGTCTCATTATGCCAGtcgtacacacagtactgtaccactttttttactgtgaaCATGTTTCCATGCTGTTTGGATGTGCAAAATACTGCAAAATGCATTATTACCAACTCATATgactattaatgattttttaactGATACTGACTTGGGAGCTAAATGAAATGCAGAAGTAGTGCTGATTGgcaaatttattttaacaaggagaaagacaaaaagatcACCTATGACCATTCTATGGTTCTCTCTTAAATtgacaccaggagggtgaataaTGCTCCACAACTAAACTGAACAAAGACAAATAATCACCCTTTCCTCTATTCTTACCTTTCATTTAGTTTCATTAATCcaattaaactgtaaaaaaaaaatattcaaatatgtaagcgattactttttttttaaaaaagaaagatttataacttttttgtaaatgtgCCAAAATAGTAACAAACTGTGcaaaaatacttaattaaattaattaaaatatgaaaaaattgaaaatcactgccacaaataaatagagttataaaataactcaattttggGAGGAGGTATGTGCCTGAAGCACCTCCCTCTTCTAATCAAACATCCTATAAATACCCTGCTCTTCACTTACATATCATGATAAGTTTTGGCAACCCTCCACCACCCCATCTTCTCCCATTAATTCTGCTCCCTCTCCCTCCTGACTCTACTTATAGAAGAGTCTTCCTATGAGAAGCTAAAGCTTATCAAACTGCTCACTGCTGTCTATTTTCTCTCTTATCATCTCTGCACAAAAGAAACATATGCTGAAGGCATGTTTTTAAACTAGCAAATTaacatcatgattttttttgttttggaaatcacagtaaaacagtaattctATTAACACCAAAGCACTACTTAAATCAATTATAATTTGAAAGTGAGGTAGTATTTTAGAAAACTCAGTAATATCTCAAAATAGAGTAAAATCTGATCTAGATGCATATTGAGACTATTGAGATATGTCTAAGTGACACATTGccatgtgtattttttttttaatactactaCATAGTACCTCCTAAAGTTTTACTAGGTGCAGTAGAAGGCATTGCAAAacgtaaagaaaataaagatcaGTTCATTCTCTGGCCAGCAGATGGAGACGTGAGCTCTTAATTACTGCTTAAATCTCCTTCttttaatgaaaacattttCATGAGTCAAATGGGGAGTCAGAGTCTTTCTTAGGCCTGTCAGGATACATTTGTTTCTTTGGAGAGTATATTGTCACAGAAATGATAAACAAGAGAATTTTATTCCACTGATACAACCATAAAGTAAcagcaaataatgcaaataagccAATTTCTGAGGGCAGTAGCTTTTCTTTAAGAATATTTACATATTGGAACTGTAATATGAAGttttaatatcctaaataaaaaaataagataaaacagTCAACATATCAGCTCACATTGATTGGTCTTTctaaactgttatttttttatattgatcaAAATAATCAGATGCGCTTCTGTCTTGGTTGAAGTGAAAATCTGCTACAACTCCGCCTCTCTAAAGCTACATTGGCTTACATTACAGTGTTGAAGTGGCATTTTATTGCTTTGTCCAAATTTGACACATTCTGTGCACATGTGTATGAGAAAATCTGAGCCTTTAAAATCAGTTTTGAGTGATTTTTTAGATGTTGGCTGTGATATGACCTCAAccaaacagtgattttttttttttgcttttacactttacacattTTACTACATAGAACTAAGCAATATAgtatgcagtattttttttatagagtatTATTTTATAGAGTATTACTAAGGGTGATCATTTaccacaaataaattaaatttatccCAGAAATCAAGCTAACATTCCTTTTAGtcaactttaatttttttaagtttaaagaaCTGAAAtcatgtgatgatgatgatgatgatgatgagtttcaataattcattattttaagataaagtattgtaaaataattttagacaaacaatagaaaaaatatCAATCTTTGAGATCAATCTTAAAGTCCCATGTTTAGAATCAGATCACCATTTACTCTGTGATTCCACCACTAGACAGCAGTGTAGGTTAACAATACTGTAAAGAATAAACACAAAGTACGCAGTCTGCTGTGAAGGAATATCAGGTACAATACTAAatggttttttttgtgtgtttttttatttgtgattcACTGGTGACTTcatttattaatgcattttttcatttattttttgacatCTTACTGTTTGGGATGACTGTATGAACTTTGAACTGTGCAATAATGTTCTTTTATACCTCAAAATAAACCTCTCTATATCtccaaataaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650506.1 lncRNA upstream 29575 409735 ~ 420176 (+) True LOC103044902
TU129343 lncRNA upstream 29739 409642 ~ 420012 (+) False LOC103044902
TU129344 lncRNA upstream 29739 413699 ~ 420012 (+) False LOC103044902
TU129275 lncRNA upstream 96220 270113 ~ 353531 (+) True G95961
TU129262 lncRNA upstream 146541 298967 ~ 303210 (+) True G95949
TU129357 lncRNA downstream 65786 525968 ~ 526284 (+) True G96018
TU129358 lncRNA downstream 66293 526475 ~ 526761 (+) True G96019
TU129359 lncRNA downstream 67248 527430 ~ 527748 (+) True G96020
TU129360 lncRNA downstream 70502 530684 ~ 530965 (+) True G96021
XR_002650510.1 lncRNA downstream 71675 531857 ~ 533069 (+) True LOC111193406
XM_022674060.1 mRNA upstream 224956 163671 ~ 224795 (+) True cep162
XM_007232955.3 mRNA downstream 20977 481159 ~ 495383 (+) True LOC103038500
XM_022674061.1 mRNA downstream 136804 596986 ~ 636430 (+) True crhr1
XM_007232950.3 mRNA downstream 147733 607915 ~ 636430 (+) False crhr1
XM_007232946.3 mRNA downstream 192442 652624 ~ 682305 (+) True LOC103035972
XM_022674062.1 mRNA downstream 225668 685850 ~ 698734 (+) False LOC103035662
TU129495 other downstream 339054 799236 ~ 808574 (+) True LOC103040575
XR_002650511.1 other downstream 483691 943873 ~ 948585 (+) True LOC111193408
XR_002650519.1 other downstream 3404808 3864990 ~ 3882676 (+) False LOC111193421
TU131003 other downstream 4505518 4965700 ~ 4975504 (+) False ndufaf6
TU131004 other downstream 4505518 4965700 ~ 4975504 (+) False ndufaf6

Expression Profile