RNA id: XM_022674286.1


Basic Information

Item Value
RNA id XM_022674286.1
length 2664
RNA type mRNA
GC content 0.47
exon number 16
gene id nap1l1
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 8799265 ~ 8815140 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCGCGCTCCCTTTTTTACCGCCATCAGAGCGGCGCGAGAGAGACACGCAGATCCAGCAGGCTGAGGCAGAGTCTCCGAGTCCCGGCCTCACAGTCCCGCCTCAGACCGCTTCATCTCCGCCTACAGAGTCTCCCGCACCCGCCGgaATAAAAACAGACATGGCCGATCTCGACAATAAAGAGCAGGCTGAGCTGGACCCAGCTGATATGGAAGATGttgaggaggtggaggaggaggagaccgGGGAGGATGTCAACAGTAAAGCGAGGCAGCTGACTGTGCAGATGATGCAGAATCCTCAGATCTTGGCAGCTCTGCAGGAGAGGCTGGACGGACTGGTGGGTTCCCCTTCCGGGTACATGGAGAGTTTACCAAAGGTAGTGAAGCGACGTGTAAATGCGCTGAAGAACCTGCAGGTGAAATGTGCTCACATCGAAGCAAAGTTTTACGAAGAAGTTCACGAGCTGGAAAGGAAGTATGCGGCTCTGTACCAGCCTCTGTTTGACAAGCGCAGTGACATCATCAAAGCGGTGTATGAGCCAACAGATGAGGAGTGTGAGTGGaagcaggaggaagaggaagagctgACAGTAAGTAAGCAGGAGGAGATGAAGGAGAAGGCGAAGCTTGAGGAGGAAAAGAAGGATGAGGAGAAGGAAGACCCCAAAGGAATCCCTGAATTCTGGCTCACTGTGTTTAAGAACGTGGACCTGCTCAGTGAAATGCTGCAGGAACACGACGAACCAATCCTCAAACACCTACAGGACATCAAAGTAAAGTTCTCTGATGCAGGACAGCCGATGaGCTTCACATTAGAATTCCACTTTGAGCCCAATGACTTCTTCACAAACACAGTTCTGACCAAAACCTATAAGATGAGGTCTGAGCCAGATGAGTCTGACCCATTCTCCTTCGACGGGCCAGAGATTATGGGCTGCACAGGGTGTACGATTGACTGGACCAAAGGGAAAAACGTCACATTGAAAACCAtcaaaaagaagcagaagcacAAGGGTCGTGGTACCGTCCGAACAGTTACGAAAACTGTCCCCAACGACTCCTTCTTCAACTTCTTCACTCCTCCTGAAGTACCAGAAAGCGGAGAGCTGGATGAGGACTCCGAGGCAGTTCTGGCAGCGGATTTTGAGATTGGTCACTTCATTCGCGAGCGCATCGTCCCCCGAGCTGTCCTCTACTTCACTGGAGAGGCCATTGAGGATGACGACGATGATTATGATGAAGAGGGTGAGGAGGCTGATGATGAGgagggagaggaggaggcGGATGAGGAAAACGATCCGAGCTATGATCCCAAGGTGTAAATGGTGTGTAGAAATAACCCAGTCCTGAAGGATGCCAACCCCCCAGCAGAGTGTAAGCAGCAGTGATGGAGCTCCACCGCGGTTGGGATCCACTGCACTGTAACAGCTTCAGAAACATAGTTCCTTACCGCcttattataatgttttgtattttcttggTAGAAATAATTGAAGATGAAGAGATACGGTTTttgttacagaaaaaaaaaaaaaaaacactgactcaTTATACCAGAGCCATGGCTCGTTCATCACTTAGTATTTTACTAGACCGGTTTTCCtctgttctgtttgtttatttttctttctgtaaaatAGTTAGAATGCTGAAACTCCCTCAAACGCATGACACTCGTTTCTTCACTGCTAAAAATAACTAGTTGGGTTCTCGTGATGTCGTTTGTTGTATTGCTCTTGGACAACAGCTGTGGACCAAAGGATGTGAGATGCAGCGAAATTAGAGTAGCCATTCACCTGATGGcactgcctgttttttttttttttttttttaaattgggcTTGATGTGTTGTAACATTCCATGTGCTAGATTACTGCGAGTCAAGCCCTGAATTGGTAATTAAATCTGGCCCATCACATTCCAGCCTGTGAGGAATTGATCCTGCCCACTTCTGGCTGTAACATAATGCCTTTATTGCAACTAGCCCAAATAGCTCCTTGTTTTGCTCCTTGGTGTGGTACATGATTGCAATTAACTGCTGTGTAGAAAACTATGTAGGCAATGGAGaatggggtgggggggggtcaATTGAGATTCAGCTCATTTTAGCACTTTTTCATGGCGTATGCTGAGGACGTTTTTCGGTTTTAGCCTGCATTTCAGCACAGAGGGGGTTCTGCCCTGTTTAACCTGGGTTAAGTTTTATTGGTTCAGTTTAAATCATTCTTAACCGGGTTAAAACTAGTGCTAAGTTAACACTTGTCATGCTTATTAACACTTGTGGTGGTTTTAAGCCCAGCTGTAAGTGTTGCTCGTGATGAGTGTTCAGCCAGGCAGGACCAGTCACAAGATTTtgattctgattggttggtgttcaTCCAGCCTCTGTGTTGCAAGCCCGTCACTGTGAAGGGTTGTATGTGAGTGTCTTTGCGAATGTGTGGAAATGTACAGTCAGGTTTTGGTAGCCTGTTCTCTTGTAGCCCAACGCAGCAGAAAGCAATAGCACCCCTCTGGAGTCGACCCTAAGAAGCCCCTGTAGCCTGAACAGTGAGTGAATGCTGCAGCTGTTGTCGAAGTGAAATGCCATGCTACAGATACTAATGTACTCAATAACTGTACGTGGATGTATATTCATGAAATAAATGGGTTAAACATCTGA

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0001878 response to yeast biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11279 NAP1L1, NRP; nucleosome assembly protein 1-like 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132683 lncRNA upstream 47780 8750636 ~ 8751485 (+) True G98436
TU132675 lncRNA upstream 56817 8741460 ~ 8742448 (+) True G98432
TU132672 lncRNA upstream 62314 8736223 ~ 8736951 (+) True G98430
TU132671 lncRNA upstream 65025 8733971 ~ 8734240 (+) True G98429
TU132478 lncRNA upstream 192210 8602977 ~ 8607055 (+) True G98285
XR_002650530.1 lncRNA downstream 47735 8862875 ~ 8893262 (+) True LOC111193443
XR_002650531.1 lncRNA downstream 47735 8862875 ~ 8893262 (+) False LOC111193443
XR_002650534.1 lncRNA downstream 71302 8886442 ~ 8887632 (+) True LOC111193445
XR_002650532.1 lncRNA downstream 73527 8888667 ~ 8893262 (+) False LOC111193443
TU132718 lncRNA downstream 78914 8894054 ~ 8894280 (+) True G98457
XM_022674285.1 mRNA upstream 3485 8758128 ~ 8795780 (+) True osbpl8
XM_022674283.1 mRNA upstream 65375 8723036 ~ 8733890 (+) True LOC103030255
XM_022674284.1 mRNA upstream 65375 8723042 ~ 8733890 (+) False LOC103030255
XM_022674280.1 mRNA upstream 98288 8688272 ~ 8700977 (+) True LOC103029611
XM_022674279.1 mRNA upstream 138997 8648953 ~ 8660268 (+) True LOC111193442
XM_007239442.3 mRNA downstream 3773 8818913 ~ 8821189 (+) True LOC103033147
XM_022674288.1 mRNA downstream 101436 8916576 ~ 8926508 (+) True krr1
XM_007239445.3 mRNA downstream 209247 9024387 ~ 9034301 (+) True ccdc107
XM_007239449.3 mRNA downstream 232725 9047865 ~ 9080238 (+) True LOC103035505
XM_022674292.1 mRNA downstream 364645 9179785 ~ 9195720 (+) True cpsf6
TU132007 other upstream 1668456 7127804 ~ 7130809 (+) True G97931
TU131997 other upstream 1729136 7068688 ~ 7070129 (+) True G97926
TU131996 other upstream 1733253 7062190 ~ 7066012 (+) False apoc1
TU131601 other upstream 2234262 6532516 ~ 6565003 (+) False G97678
XR_002650533.1 other downstream 47600 8862740 ~ 8895597 (+) True LOC111193444
TU132981 other downstream 497266 9312406 ~ 9312803 (+) True G98636
TU133263 other downstream 1182572 9997712 ~ 10002046 (+) False G98840
TU133280 other downstream 1245293 10060433 ~ 10069002 (+) True G98845
TU133394 other downstream 1357413 10172553 ~ 10178459 (+) True G98934

Expression Profile