RNA id: XM_007239449.3


Basic Information

Item Value
RNA id XM_007239449.3
length 1833
RNA type mRNA
GC content 0.57
exon number 2
gene id LOC103035505
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 9047865 ~ 9080238 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCGTGCTGCTCCTCTGCTCGCGCGCGCGTCATGCCTCTCTCCGCCGCCTCTTCTTCCTCGCGCTCTTCATCACTTTCCTCTACCTCTCCTGAGCCGCGATGGGGAAGCTCGAGGACAACAGCAGCACAAACATAAACAACTACACCTGCGTGCGCCCTAACAGCAACAGCGGCAACGAGCGGATCATCCTGAACGTTGGGGGCACGCGGCACGAGACCTACCGGAACACGTTGCGCACGCTACCGGGCACGCGCCTGGCGCTGCTGGCGACCGAGCTGCCCTCGTCCGCGTGCGCCGTGACGGCGGCGGGCTGTTGCGGTGGTCATAGCAACGCGCTCGAGCCTCACCACCCGCTGCAGCTGCACCTCCCGCAGCAACAGGTGCGCGCGCGCGCCAACAACGAGTACTTTTTTGACCGGCACCCGGGAGTGTTCGCCTACGTGCTGAACTACTACCGGACCGGGAAGCTGCACTGCCCCGCGGACGTGTGCGGCCCGCTGTTCGAGGAGGAGCTCAGCTTCTGGGGCATCGACGAGACGGACGTGGAGCCGTGCTGCTGGATGACCTACCGGCAGCACCGAGACGCCGAGGAGGCGCTGGACGTCTTCGACATGAACGCGCTAGGTGGAGGACCCGAGGGACCGGGCGGTGAGGACGGCGACGAGCTGGGCGAGGCGGCAGAGCAGCGCGAGCACGCGGATAAGGAGCGCGATACGGGCTGGAGGCGGTGGCAGCCCGTGATGTGGAACCTTTTCGAGGACCCGTACTCTTCGCGCGCCGCACGGTTTGTGGCTTTTGCTTCTTTGTTCTTCATCATGGTCTCTATCACCACCTTCTGCCTGGAGACCCATGAGGCCTTCAACACGATCATCAACAAAACTGACGCGTTACGGAATGACAGTTTGCTGGAGGTTTCCCCACAGTATGAAATAGAGACTGACCCAGCGCTTACCTATGTGGAGGGCGTCTGTGTTTTATGGTTTACTTTCGAGTTCTTGGTCAGAGTGACATTCAGCCCTGATAAGCTGGAGTTTGTAAAGAGTGTCCTGAACATCATTGACTTTGTAGCCATCCTGCCCTTTTACCTGGAGGTCGGGCTGAGTGGCCTTTCTTCCAAAGCTGCTAAAGATGTGTTGGGATTCCTGCGCGTCGTTAGATTTGTCCGGATCCTTCGGATTTTCAAGCTCACCCGGCATTTTGTAGGTTTGCGGGTCTTGGGCCACACCCTTCGGGCAAGCGTTAATGAGTTTTTCCTCCTCATCATCTTCCTGGCCCTTGGAGTCCTCATCTTTGCCACCATGATCTACTATGCTGAACGAATTGGCGCTAACCCCAACGACCCCACAGCCAGTGACCACACCATGTTCAAAAACATCCCTATTGGCTTCTGGTGGGCGGTTGTTACCATGACAACATTGGGCTATGGGGACATGTACCCACAGACATGGTCAGGTATGCTGGTGGGAGCACTGTGTGCCCTAGCAGGCGTGCTAACAATAGCCATGCCTGTGCCAGTTATTGTGAATAACTTTGGTATGTATTACTCTCTGGCCATGGCCAAGCAGAAGCTACCCAAGAAACGTAAGAAGCACATCCCCCAGATGGTTCAGGTGGGGTCCCCAGGCTACTGCAGGACTGATTTCACCATGGCCTGCAACAACACCCAGGGGCGTGGCCTGGAGCGCCACAGATCAGGTACAAATAACATCAAAGATCAGGTGAACGAACCGGTCGGTGGTGTAGCACTGCTCCAGAGTAAGCCATAGTGTGTTTGGGATAGAGTGTGTATATGCAAAAATATGTTACACCCAGAATATGTTAAGGCCAGAGTG

Function

GO: NA

KEGG:

id description
K04888 KCNC2, KV3.2; potassium voltage-gated channel Shaw-related subfamily C member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132744 lncRNA upstream 82696 8963313 ~ 8965169 (+) True G98483
TU132723 lncRNA upstream 137580 8910008 ~ 8910285 (+) True G98462
TU132721 lncRNA upstream 140181 8907264 ~ 8907684 (+) True G98460
TU132718 lncRNA upstream 153585 8894054 ~ 8894280 (+) True G98457
XR_002650532.1 lncRNA upstream 154603 8888667 ~ 8893262 (+) False LOC111193443
TU132764 lncRNA downstream 3351 9083589 ~ 9086583 (+) False G98496
TU132765 lncRNA downstream 3351 9083589 ~ 9086317 (+) True G98496
TU132766 lncRNA downstream 3531 9083769 ~ 9084299 (+) True G98497
TU132762 lncRNA downstream 4162 9084400 ~ 9086317 (+) False G98496
TU132769 lncRNA downstream 6395 9086633 ~ 9090683 (+) False G98498
XM_007239445.3 mRNA upstream 13564 9024387 ~ 9034301 (+) True ccdc107
XM_022674288.1 mRNA upstream 121357 8916576 ~ 8926508 (+) True krr1
XM_007239442.3 mRNA upstream 226676 8818913 ~ 8821189 (+) True LOC103033147
XM_007239440.3 mRNA upstream 232725 8799266 ~ 8815140 (+) False nap1l1
XM_022674292.1 mRNA downstream 99547 9179785 ~ 9195720 (+) True cpsf6
XM_022674047.1 mRNA downstream 134614 9214852 ~ 9268400 (+) True LOC103042523
XM_022674048.1 mRNA downstream 282830 9363068 ~ 9365903 (+) True LOC111193395
XM_022674294.1 mRNA downstream 324582 9404820 ~ 9458769 (+) True LOC103028562
XM_022674295.1 mRNA downstream 393159 9473397 ~ 9508318 (+) True LOC103028240
XR_002650533.1 other upstream 152268 8862740 ~ 8895597 (+) True LOC111193444
TU132007 other upstream 1917056 7127804 ~ 7130809 (+) True G97931
TU131997 other upstream 1977736 7068688 ~ 7070129 (+) True G97926
TU131996 other upstream 1981853 7062190 ~ 7066012 (+) False apoc1
TU131600 other upstream 2482862 6558857 ~ 6565003 (+) True G97678
TU132981 other downstream 232168 9312406 ~ 9312803 (+) True G98636
TU133263 other downstream 917474 9997712 ~ 10002046 (+) False G98840
TU133280 other downstream 980195 10060433 ~ 10069002 (+) True G98845
TU133394 other downstream 1092315 10172553 ~ 10178459 (+) True G98934
TU133435 other downstream 1413553 10493791 ~ 10498518 (+) True G98967

Expression Profile