RNA id: XM_007256813.3


Basic Information

Item Value
RNA id XM_007256813.3
length 3470
RNA type mRNA
GC content 0.50
exon number 8
gene id rhbdl1
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 1322114 ~ 1415632 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gggagtgtgtgagaaggagagagagaaagatttacATATAGGTAGAGGCAGCTGCAGAGACGACAAGGCgaaggaaaagagagggagagagacgcGAAGGGCTGAAGCgaaagaagaaggagagagagaggtggatagaaggagggagagagagagcgggctGCATTGTGTGTTTTGGGAAGAGGGAGAAGAAGGCTGTCTTAGCTGCAGtgtagaaaagagagagagcgaaagagagagagagagcctgacCTGAAGCTTGACTGGATTTTCCCTCGGCAAGCGGCCGAACGTGGGCAGAGGACTGGAGGGCACCCCGCAACCACTACTACATCTTCTGCCagcctgcctgcctgtctgtgtgtgtgtgtgagtgtgtgtgtgtgtgagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtatgtgtgtgtgccgcCCTCATAGGGGCAGGCGTGTCGAAGCGACTGGCAGGCGCGTGTGCGTGTGCCAGAACgcaagcatgtgtgtgtgtgcatgagtgtgactgtgtgagtgtgtgtgcggcCCTgcgtgtgtgcgtatgtgtgtgtctttctCGTTGTGGCGGTTGGTGAAGCATTGCCCGGTATATGGATAGGAGCTCACTGTTTCAGCTCATTCAGGAGCAGctgGACCCTGAGCAGACTGGTTTCATCGCGGTGGAGAACTTCACCAGTCTGGCCGAGCAGCATGAGCTGCAGCTGGACCCCTCAAAGCTGGACATGCTGCTGGCCCTCGTCCAGAGTGACCAGCGTGGCCACGTCTGCTACCAGGAGCTCATTGAGCTGCTAAGCAGCAAGCGCTCCAGCAGTTTCCGTCGTGCCATTGCGAATGGGCGTCGCACACTGCAGCGAGAGATCTTATTGGACGAGACGGGCCTGGGCGTGTACAAGCGTTTTGTGCGTTACGTGGCGTACGAGATTTTGCCCTGCGAGACGGACAGACGCTGGTACTTCCATCAGAGCAGGCTCtgccctccaccagtctttatGGCCATCATCACCATTGTGCAGATCGTGGTGTTTATGTGTTATGGAGTGAGGCTGAATAAATGGGTTCTGCAGACCTATCAGCCGGACTTCATGAAGAGCCCGCTGGTCTATCACCCAGGTCATCGAGCCCAAGTCTGGAGATTCTTCAGCTACATGTTTATGCATGTTGGgtTAGAGCAGCTGGGCTTTAACGCACTTCTCCAGTTGATGATTGGGGTTCCTCTGGAGATGGTACATGGAATCCTGAGAATCAGCCTACTGTACATGGCAGGAGTCGTGGCAGGGTCTCTGACGGTGTCGATCACGGATATGCGAGCTCCGGTGGTCGGGGGTTCTGGAGGAGTTTATGCCCTCTGCTCTGCACATCTCGCCAACGTTGTTATGaactgGGCCGGGATGAAGTGTCCGTATAAACTGCTGCGGATGATCCTCGCACTCGTCTGCATGAGTTCTGAGGTGGGTCGGGCAGTGTGGCTTCGCTTCTCACCTCCGTTGCCGTCGTCCGGGCCACAGCCAAGCTTCATGGCCCACCTATCGGGGGCTGTGGTGGGCATCAGCATGGGCCTGCTGATCCTGCGCAGCTACGAGGAGTCCCTCCACAAGCAGTGCTCCTGGTGGGTCCTTGTCTTCTCCTTCATCACCTTCCTTCTCTTTGCCATCTTCTGGAACATCTTCGCCTACGAGCTACTGGGCGTTCAGATCCCACCTCCACCCTGATGACACGCCCCCCTTTGCCCCCATCCTAACTAAGCCCCATTCCCAACTCTGAAGACACAGCTTCATTCTAACTCTGGCTGTCGATGGCCACACCCCTTGGGGAGCCAGATCGTTTTGTCCGCCATCCTCCTTTTGTTATAGCTCCGCCCTCTTTTCCTCCACTGGAACAGCAGTGGAGGGAGGGTCCAAATCTGGACAAGGAGATGGATTATAGTGACAGCAATTACAAAAGACATACTTTTCCAAAGTGATATTATTTACTCACGCATccttatttaactttattaacaCGTTCCTAGTTGAATACATTTAAGACCAGATTGAACTTTCAGTGTTAAACCAgtacaaaatcttttttttttctgtttttgggtCCAGTCTGCTctctcattttaatttttaattccaaaaaagaaaaacaatgatttCAAATGGTGCATTATTATACGTATCTCTGTTGGGTCTTACTCTATTCTGTGACTATTCTGGAAAGTTAAATATGGAAATATACAAGGACTTATGTGCTAGACAGCCcacttcaacacacacacacacagaaatacacacaaagacacacacacacagactaccAATAAGAGGATGGATTCTGACCCATCTTGACCTTCCCACTGCAGGGGTCACAAGGTCGAGTCCATGGCGCTATTAGCGTGGACAGAGGCCACTGAAACCAGACCACATGCGTCCCACGTCAACAGTTGCCTTGGTTACCTTTGTCCAGTTGCTAGGTAACCATCGCCCAAGGTGTGAGGTTCACACCCCCGTCTCCCACTGCCCACTCCACCTCTCCCAATAGAACCAGTGGTCAGCTGATCAGATTACGGTGGCCTCGAGAAGTCGAGAAGTTTCAGCGCTGTCCTATCTCCATCCCCTTTCTCTCAAAGAAGAGCATCTAGAACATctaccttcaaaagactctaaAATGGGCATTTTCTCTCCAAGGTTGCCAGATATGTGAAATAAATATACCTCCCCTGTGTGAGAATTTCTGGATGGCAGCATCCTTGTGACTCGCTGCCAGAGAGTCAGAAGAGGAAGTCGGTTCGAAATTCTGCAGTGCCAAGTTACCATTCGATAAGCTGCTACGTCAAATtctacatttaatattgaatatctttatttttatttatgttactaGAGCTTTGCTATGTCTGGGGGTGGGGGGAAGTGTTATTGAAGACACAGGGGTGTCATGGGGGGTGGGTTGATGAGGGAAAAGGGGATGGGATTGGGGGGTCATGAAAAGCACGATGACGTTTAAGActgatgtgtgtgttgttgtgaaTTTTCGtgccatatatttatatttgtacttCTATTTATTCAGATCATCGTTCTGTGCTTGCGGCTTCTGGAAGCTGGTCTCCTCAAACCGAGTGGTGATCATGTGAAATGTGCACTGGAAGAAGGCAGCGCATaaaacagcaaagacacacacacaaacacacaaccttCAAATGAACTGCAGTGAATGCTGGTGCATATCATACATCTGGGCATTTTTCCAAAATGACTTTCTTACCATATGGCTATGTTCCAGTTATTCATATAAACTGCCTTAAGCCCTCTCCCTCATTTCTTCACAAAATATTCCTATTGTACTGTATGTTGTAGTGGCTGGCCAAGGTGAAGTGCAGCAGTGGAACAGTGTCTAGTTAAACAAAACCTGCAATATACTGTAGAGTGACATTAAAAATGTTGGATATCTA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K02857 RHBDL1_2_3; rhomboid-related protein 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129515 lncRNA upstream 496610 835482 ~ 836102 (+) True G96132
TU129500 lncRNA upstream 523182 809321 ~ 809530 (+) True G96124
TU129490 lncRNA upstream 588973 736741 ~ 743739 (+) True G96116
TU129424 lncRNA upstream 746600 585905 ~ 586112 (+) True G96073
TU129412 lncRNA upstream 753881 578494 ~ 578831 (+) True G96061
TU129715 lncRNA downstream 10626 1426258 ~ 1429217 (+) True G96291
TU129926 lncRNA downstream 394757 1810389 ~ 1857895 (+) True G96460
TU130001 lncRNA downstream 582239 1997871 ~ 2003611 (+) True G96517
TU130005 lncRNA downstream 595759 2011391 ~ 2014287 (+) True G96520
TU130040 lncRNA downstream 659754 2075386 ~ 2075954 (+) True G96541
XM_022674080.1 mRNA upstream 29933 1277784 ~ 1302779 (+) False rhot2
XM_022674079.1 mRNA upstream 29933 1277785 ~ 1302779 (+) True rhot2
XM_022674081.1 mRNA upstream 29933 1277789 ~ 1302779 (+) False rhot2
XM_007256809.3 mRNA upstream 61210 1224176 ~ 1271502 (+) True wdr90
XM_022674033.1 mRNA upstream 123315 1020134 ~ 1209397 (+) True nlrc3
XM_007256815.3 mRNA downstream 24197 1439829 ~ 1455488 (+) False wdr24
XM_022674083.1 mRNA downstream 24260 1439892 ~ 1455488 (+) True wdr24
XM_007256824.3 mRNA downstream 67054 1482686 ~ 1486444 (+) True LOC103029750
XM_022674089.1 mRNA downstream 82479 1498111 ~ 1515737 (+) True c11h7orf50
XM_007256830.3 mRNA downstream 471969 1887601 ~ 1905908 (+) True colec10
XR_002650511.1 other upstream 384127 943873 ~ 948585 (+) True LOC111193408
TU129495 other upstream 524138 799236 ~ 808574 (+) True LOC103040575
XR_002650519.1 other downstream 2449358 3864990 ~ 3882676 (+) False LOC111193421
TU131003 other downstream 3550068 4965700 ~ 4975504 (+) False ndufaf6
TU131004 other downstream 3550068 4965700 ~ 4975504 (+) False ndufaf6
TU131005 other downstream 3550068 4965700 ~ 4967968 (+) False ndufaf6
TU131002 other downstream 3552472 4968104 ~ 4975504 (+) False ndufaf6

Expression Profile