RNA id: XM_007256836.3


Basic Information

Item Value
RNA id XM_007256836.3
length 5244
RNA type mRNA
GC content 0.44
exon number 22
gene id ice1
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 2126283 ~ 2148738 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgtttggggtcctGAGTCAGCGTGGTGGTGctgctgtgcgtgtgtgttgcgTGTTTTGGTCAGTAGTGTGGCTCTGGGAGCTCCTGGGCGCTCCTGGGCGCGGCGGTGCTGTGTTAGGGGCGTTAGGGGAGTGTGTGGACCATGATGCCGGGGGAGAAGCAGGCTGAAGCCGAGGGAGAGGCCTCTGAGGCCACTTCAGGGACTTGTGAAAACTGCACCTTATTAAACCGGAGCCTGGATGAGTACATGGCTGCCTTGTTGACACTGAAGCAGAAGATTATTGACACAGAcCACTTCTTGAGTGAGTACAAGGAGAAGTGTGATGAGCTTCAGAAATCCCAGAGAGAGAGCAGCAAGCTGCACCTGCAGTTGGAGGAGGTACTACTGAAACTCGGCCCTTTAGAAAAGCAGGCTGTGGATTTCGAGGCAGTCAAGGCTGAACTGGAAGAAACAAAGgctGCTCTGAAGTCTTATCAGCAGAAATGTGAGGAGGTGGGCAGTTTGAGGGAGGAGAATGCCAAAACACTCACTTTGAACGAGAAGCTGAAAGGCAGTCTCCAGATGGCAGAAGATGAAGCAAAAACCCAACGTCTAGAATATGCAATGTTAAAATCTGAGAAGGAAAGCCTAGAAAAAGACCTACAGAAAACACAAGATAATCTCAGGATAAGTCAGCAGGcagtggaggaggtggagaacCTGAGGTTGCAGAATGCCAAGACATTGATTGTaaaaAGTAATCTTGAAAATCAGCTTCTTCTGCTTGAAGACACaaaagttaaacaaaacaatgaaaTCACAGATCTGAAAAGAGAAAACTGCAGGCTTGAAGAAAACCTCGGGAGAGTGCAGGCAAAGCTTGAGCAATTGGAAAAAGAAGTTAAGAAAGagaaaagaagTATATCAACACAAACAAAGTTGGAGCCAAAAATTGATAAAgCTAAAGTTAAAATGCTCCTAGAGGAACTCTGGCATAGTTTGGAACCACTGTCCCAAACCGCAGAAATGCTGGACTTAAATgAAAATCAGCACTTATCCACCGTATCAGCAGCCAGACTGGAAAGACATCCTCCTCAGTTACTGCCAATCAGTCCTTGCAGAAAGCAGATGCCACAATCAGCTACCTCAACTCCTGCTAAAAGAAGGTCATGTGACGCACCAGGGGCATTCGGTTCTACGCCAAAAGCGTTTCCTGATAAGAGTCAGTCTGAAGCTTCTTTTCTTGAGGAAAACAGTCGGAGCGAAGAACAAAAGAACGAGAAATCAAAAAGGGCCAAGAGGAAGAGGAGCCTGGGGTCAGAGGAGCATCATCAGAGTAGTACGTTGATTGACACAGCCAGCGATCGCTCCTCAGACAGAGACTGCTGGAGGAGCACCACAGATGTGTGGGAGATTCTGGACTTTTTTAAGTCGGTACCCACAGCTTTGTCGCCATTGCCTGTTTCTAATGAATTGGTTGAGCTGGATGAAGATATATCAGCATCAGCTGTAAATGAAAGCTCATCAGCCATTAATAATGATGGTGAAAAATTAACAGTCAAGAACACTGAGCCAATGCCTGTAGAGGATGCTGAAGTAACTCCATCTGTCAGCGCCTCACCTGGCTCCATTTCAACATCGAGCCTTGCAAACACAGAAATGTCATCAGTTCCTCTGGGGGCTGGTCATGAAGTCACTAACAGCTTTTTGTCAGATACCCAAGAAATGGAAGTGAATGAACTGTCTGAGGCTAAGGAGGTTTTGGAAGACGTGAAGCCCAATGAAGTTTCATCAGCAGGTTCACAGAATGGACATGAAATGGAATGTGGTACAACAGAACCAGTCCCAGAATCAGCACACTCCCAGCTGAGCAATGTGGAAGACCATATGAATCTTATCAACATCCAGACACAGTCTGTTGGCAGTAAAATCCCTGATGCACTTTTTAATGATGTTATGAGTAAAAGTTCAGATACTGGTAATCATCTTATAAGTCATGACCACAAGTGCCTtattgatgatgatgctgataaATCTATTGAGCCTCTTTCTGTAGCTGAAGCAAATGGGACTGATGATGGTTCTGAGATTCATCTGAATTCAGAAAGAGAAGCAGAAACCGAGCCAGAAAGGACAGTAGAGGAAATCCAGGGCGGCTGGACAGAAGGAAATGAACCAAAGACCCCTGAAAATCAGAAAAGTGTTGACAGAACAAAACACGATTCCTCCAGTAGCAAGATCACTGAGCTTTCATCTGGAGACCCTCCAAAGCCTGAGGAACTTTCAGATGAGGAGGAGTTCTCTGATCTGAAGAGAAAAGTTCGAGGGATTTCATCAAAGCCAAAGAATTCCCTTGAGAATTTGAACAGTGTGCCACCATCACTTGGACAGGGAAAGCCTACAGATCAACTAGAGGCAACACATTCTGAAACTGAAGAAGACATAATGAAAGTCGGCAGCCATATTGAAATCTCCAAAGCTTTACCTGTTCCTGAGAATGAGGGTGATTTTGCAAGCTTGGAAGACAAATACAACACAGACCATACTGTCGGACCCAAGGATAGCTTGGTAATAAATGGCAGCCAAGAAATGGCATCAGTAAAGAAGCTTGAAGATGAATCACTGAATCTTCTCCAAACCTCACTGACGCAGATCACTCAtgtcagtaataataataataaaaataatgagttacaTAAACTGTCTGGAGCTTCTGAAAACAGTGATAAAAAGGTTCCCAATATTCTTCCTTCTGAAAACAGTGATGAAAAGGTTCCCAATATTCTTCCTTCTGAAAACAGTGTTGAAAAGGTTCCCAATATTCTTCCTTCTGAAAACAGTGTTGAAAAGGTTCCCAATATTCTTCCTTCTGAAAACAGTGTTGAAAAAGTTCCCAATACTCTTTCTTCTGAAAACAGTGATGAAAAGGTTCCCAATATTCTTTCTTCTGAAAGCAGTGTTAAAAAGGGTCCCAGTGTTCTTTCCTCTGGCCTAAAGGAGCATAGTCCAAAAGCAATGGACATATGTGTTGACCATCGAAAGGATCAAAAGGAGGTTTGTCTACAACCTCGGATTCCAGCTGTCCAAAATCCAGTAACATTGCCTGGTATAGATAAAGAACTGAACCCATCACCTCTTACCATTCTTACCTCCAAAGATGCACTTACATCAAGTCCATCTCCAGACTCTATTGGAAGAGTTCGAACAGAAATGGGTCCACCTCTACCTCCAGTTGTTATGCCATTGACTGCAACTCCTCCGAAATTTGTAAAGCACCATACTCCAGTTAGGCCCAACATAGAATTTTCTGCCTGTCTACCCTCAGAAGGCCAATTTACTTCCAAACAAACCAAAGAAAATACTTCTCTTGAGTCAAGTCTTCAACATGAAGCAAAAATGTCCCCTTGTCTAAACACCCCTTCACCATCCAATGGGGTTCCTTCTTCTCCACTGCAGTTTGGATCTGCAACTCCAAAACATGCTGTTCCTGTCCCAGGAAGACTACCATCCTCAGCTCTGAATCCCTCATCTCCCACAGCATCTCAGGAGAACTCCATGCAAATGCTAGACACCATGTATCCAGAACTCTCTGCCCAAGCGCGGACTCTGAACATCTTGAGAGGTAACGTTAACCTCAGCCGGGTAGGGAATGAGAGCGGAACCTCACCACCTTCTGTTAATCACATCTCTGGCAACAAAACCATCAGCTCCTCATCCACAGCCTTCACCAAGACTGAGCAGAAAGTGAAAAGGACAGGAGTGAATGTTCTACTGCCAAAAAGTGCCAAGAAGCTCAGGCTGGATTCCTGTTCGCCTAGTCCAGTTAATGCTGCCTCTCCTGTGCCACTTGATAATGATCCACCAGCCAGTGTCACAGAATCAACACGCTTGCACCCAGGAAACCGTCTGTCAGGAAACAGTTCTGACCGTcatgaacagaacagaacagaaagcCAACCTAAGACCAGAACAAATGAGTCTCAAATCACTGAAGCAATTGAAAAACTCCAGCATTCGTGCTTTGACATATTGCCTGTGATCAAGAGTCATGTGTTTCTTGGAAGAATATCTCAGGTTCCTACTctaagagaggaagaaaagtcTGTCATTTCAGATTTCTGTTCAAACCAGTGGTCTGCAGACGAATTCATGTCCGTTATCTTAACTAAACTCAAGGCACAGAGATCTGTTTGGAAACAGGAATTTGTGCAGTCTGTTTTTAGAGTCTACACAGGCTTATGTCGTCAAAGAGGAGACGTTCAGAAAGCCCATGCCCTCGCATACAGTCTTCTGAAAGAAAATTACTCTGAAGCTTCAAAGATGATTTTATTCATGGTGGCCACATGGCCAGGCGTCCTGGCCTATGAGAGCTCTTTGTGCAAAGCCATTCACATAGTGAGCAAGCTGAAAGCAGAGGGAGAGATTTTAGACTATCTTTCCTCTTATCTACACTGGGACAAGAGGCCTCCAGATAACATCTATAAAATGATCAAAGGCACACTGAAAGCTTTGCTGGTGGATGTCAACCTGAAATTCCAGAAACACGATCGTCACGGTGAAGACCTCTGTCCCACTACCTGGGAATACATCTTTACCTTGGATCTTCTCTGCGCACATTTGGGATGGAAGTGGACTCATGACAATATCATCAGGAAAGAGCTATGGACAGTTCTGGATGCATGGGTGACACAGCCCAGACTTCAGCAAACACCAGTCAGAGATGTTTGTGTGGCAGCAGTTATGAGACTAATTGGGAGACTTGGTCAACTGGGCATTAAGGAGAAGACATGCCAGTCTGTTCAGAATGTTGCAAAAGCGATTAACCTCTTTGGCAAACATGCAATATCGCAAGGTGTGCCATGGGAGGTGCAGCTTTCTGCCATCTATACCATTTATGACTTGGCACCCTGCAACCCCAAAGAAGCCCTGGAGGCTTTGGCATCATGGCGTGGAGAAACCACACAGTCTGTTCCCTCAGGCGTTACCAGCTGTATCACGCAGATCGGCTGTCTCTGCCGCCAGATCAAACCATAACACAAATGTGAAGCACTAcctattttttaatgattttgtttacatttgcaCATTCTTTGTTCTTGTCTCAGTGTACATTGTTAATATTGCTGGCTTCCTGCTTTATGCTGAACAATCTTGAGACTTCTTGACTGTTGAAACAAGGTAATGCTTGTTGGCTTGTaaattattgtatattatgtatCTATAAATTTGTCAAGTTTCGcactaaaatgattttttttctaca

Function

GO:

id name namespace
GO:0032040 small-subunit processome cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130040 lncRNA upstream 50329 2075386 ~ 2075954 (+) True G96541
TU130005 lncRNA upstream 111996 2011391 ~ 2014287 (+) True G96520
TU130001 lncRNA upstream 122672 1997871 ~ 2003611 (+) True G96517
TU129926 lncRNA upstream 268388 1810389 ~ 1857895 (+) True G96460
TU129715 lncRNA upstream 697066 1426258 ~ 1429217 (+) True G96291
XR_002650513.1 lncRNA downstream 75844 2224582 ~ 2227412 (+) True LOC111193411
TU130097 lncRNA downstream 113301 2262039 ~ 2265095 (+) True G96582
TU130116 lncRNA downstream 305014 2453752 ~ 2454050 (+) True G96601
TU130119 lncRNA downstream 346631 2495369 ~ 2495929 (+) True G96604
TU130124 lncRNA downstream 352419 2501157 ~ 2503293 (+) True G96609
XM_007256835.3 mRNA upstream 4573 2110877 ~ 2121710 (+) True prpf3
XM_007256834.3 mRNA upstream 40885 2074608 ~ 2085398 (+) True LOC103032920
XM_007256842.3 mRNA upstream 171217 1950534 ~ 1955066 (+) True nov
XM_015607742.2 mRNA upstream 171217 1950534 ~ 1955066 (+) False nov
XM_022674097.1 mRNA upstream 202132 1911105 ~ 1924151 (+) True mal2
XM_022674108.1 mRNA downstream 3179 2151917 ~ 2167691 (+) True LOC103036307
XM_022674109.1 mRNA downstream 93432 2242170 ~ 2495068 (+) True LOC103036916
XM_022674035.1 mRNA downstream 587391 2736129 ~ 3006374 (+) True LOC103037869
XM_007232026.3 mRNA downstream 998631 3147369 ~ 3272603 (+) False cobl
XM_022674120.1 mRNA downstream 998631 3147369 ~ 3272603 (+) False cobl
XR_002650511.1 other upstream 1177698 943873 ~ 948585 (+) True LOC111193408
TU129495 other upstream 1317709 799236 ~ 808574 (+) True LOC103040575
XR_002650519.1 other downstream 1716252 3864990 ~ 3882676 (+) False LOC111193421
TU131003 other downstream 2816962 4965700 ~ 4975504 (+) False ndufaf6
TU131004 other downstream 2816962 4965700 ~ 4975504 (+) False ndufaf6
TU131005 other downstream 2816962 4965700 ~ 4967968 (+) False ndufaf6
TU131002 other downstream 2819366 4968104 ~ 4975504 (+) False ndufaf6

Expression Profile