RNA id: XM_015607742.2


Basic Information

Item Value
RNA id XM_015607742.2
length 1650
RNA type mRNA
GC content 0.53
exon number 5
gene id nov
representative False

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 1950534 ~ 1955066 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGCAGAGTAAAGTTTCCTCAGAGAGACCCTGAAGAAGTTATCTGCAGCTCCCGCGGCCCGAGCATGCTGAGCAGCGCGTTTCAGAGGAGCCTGGCTCTGCTCTTCTGCTCTCAGGTGGCGCTGTGCTCCGTGGCGCGTCCGCGCTGCCCCGCGGGCTGCCGCTGCCCGGAGGACCCCGCCGTGTGCGCGCCCGGCGTGCATCCCGTCCCGGCGGAGTGCGCGTGCTGCAGAGTGTGCGCGAGACAGCGCGGAGAGACCTGCTCACAGCGCGCGCCCTGTGATGCCCGGAGAGGGCTCCGCTGCGACCGCAGGAGCGGGGTGTGTGTAGCAAACAAAGGAGACTCCTGTATGTTCAATGGTGTTGCCTACCACAATGAGGAGACCTTCTTCCCAAGCTGCAGCTATCAGTGCATGTGTAGAGAGGGCCAGATCAGCTGCGTGCCACGGTGTAACCTGGACGTGATGCTCCCAGGTCCTGACTGTCCTTATCCAAGAAAGGTTCAGGTTCCGGGAGAATGCTGTGAGAAGTGGGTGTGTGAACCTCCCACTGAGTCCAGTGTGCTGGGTGCCTTGGCCATGGCAGCATACAGACAGGAGGAGACGGTGGGCTTTGACCAGTGGGATCCCAGTGTGAACTGTATTGAACAGATCACAGAATGGAGCGCCTGTTCACGGACATGTGGCATGGGCGTCTCCACCAGGGTGACCAACAAAAATCCCCGGTGTGAGATGGTGAAACAGAGCAGGCTATGCATGGTGCGGCAATGTGAAGGTCTGAAGGAGCAGAAAGCCACTCAGCGAGGGAGCAAGTGTCTCAAGATCCAGAAAAGCACTAAGGCCATCCACTTCTCTTTCAAGAACTGCACCAGCACTCAGGCCTTCCGGCCTCGCTTCTGCGGCCAGTGCGGCGACGGCCGCTGCTGCACACCACACAGTACCAAAACAGCTCAAGTGGAGTTCCAGTGTCTAGAGAACAGAGTGACCAAGAGACCTGTGATGTTCATAAACACCTGCGTGTGCCACCACCACTGCCCACGGGACAACATGGCCCACCAGCCCTCTACCGACACTGGCTACGACGGCCTCCAGCTCTGAGAATAGGCTTCTCTGAAGAAAACGTGTGTCTAAAGTGCAGTTTAGATAAAGGCACTTATTCTTCACAGAGTAATGTTTGTACTTTTGTAGAGGGAGAGCTGCAGACAGACATGGTTTAGGAGTGTTGTACCAAATCTCTGCTTGCTGAGAGTCGCAATGTGAAACGCTGCACACCGATCagccataacaataaaacacctGCCTGTTATAGTGTAGGTCCCTCTCGTGCTGCTAAAACAGCTCTGATCCATCCTCTCAACTTTAAAACCTAACTAATTTGTAAGGTGTGACTTCCTTCGATCACATCAGTGGGATAATAGTTTACCATTTTTCATTCTTTGTATTGCTTTTGGTTGATTTTAACCAGGAAAAGcccacaagacctgcctgatttTTCGGAGATGTTCTGATCCAATCATCTAGCCATCCCAGTTTTTCCTTTGTTAAAGTCTCTTAAACCCTTAAAATACCCTGTCCTgcatacaggctacaggtgtagatgatacaaaacccttttttctgcagtaaaataacttatttacgtTCTGAAAatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129926 lncRNA upstream 92639 1810389 ~ 1857895 (+) True G96460
TU129710 lncRNA upstream 493647 1364784 ~ 1456887 (+) True G96286
TU130001 lncRNA downstream 42805 1997871 ~ 2003611 (+) True G96517
TU130005 lncRNA downstream 56325 2011391 ~ 2014287 (+) True G96520
TU130040 lncRNA downstream 120320 2075386 ~ 2075954 (+) True G96541
XR_002650513.1 lncRNA downstream 269516 2224582 ~ 2227412 (+) True LOC111193411
TU130097 lncRNA downstream 306973 2262039 ~ 2265095 (+) True G96582
XM_022674097.1 mRNA upstream 26383 1911105 ~ 1924151 (+) True mal2
XM_007256830.3 mRNA upstream 44626 1887601 ~ 1905908 (+) True colec10
XM_022674089.1 mRNA upstream 434797 1498111 ~ 1515737 (+) True c11h7orf50
XM_007256824.3 mRNA upstream 464090 1482686 ~ 1486444 (+) True LOC103029750
XM_022674083.1 mRNA upstream 495046 1439892 ~ 1455488 (+) True wdr24
XM_007256834.3 mRNA downstream 119542 2074608 ~ 2085398 (+) True LOC103032920
XM_007256835.3 mRNA downstream 155811 2110877 ~ 2121710 (+) True prpf3
XM_007256836.3 mRNA downstream 171217 2126283 ~ 2148738 (+) True ice1
XM_022674107.1 mRNA downstream 171217 2126283 ~ 2148738 (+) False ice1
XM_022674108.1 mRNA downstream 196851 2151917 ~ 2167691 (+) True LOC103036307
XR_002650511.1 other upstream 1001949 943873 ~ 948585 (+) True LOC111193408
TU129495 other upstream 1141960 799236 ~ 808574 (+) True LOC103040575
XR_002650519.1 other downstream 1909924 3864990 ~ 3882676 (+) False LOC111193421
TU131003 other downstream 3010634 4965700 ~ 4975504 (+) False ndufaf6
TU131004 other downstream 3010634 4965700 ~ 4975504 (+) False ndufaf6
TU131005 other downstream 3010634 4965700 ~ 4967968 (+) False ndufaf6
TU131002 other downstream 3013038 4968104 ~ 4975504 (+) False ndufaf6

Expression Profile